Factsheet for Bra022367.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 1
plasma membrane 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92284	Canola	plastid	98.55	98.55
AT3G18870.1	Thale cress	plastid	86.18	86.5
KRH40190	Soybean	cytosol	25.45	63.64
VIT_03s0063g02460.t01	Wine grape	plastid	56.0	55.8
KRH01028	Soybean	plastid	52.73	52.92
GSMUA_Achr2P08550_001	Banana	plastid	50.55	50.73
Solyc01g109550.2.1	Tomato	mitochondrion	52.36	48.98
PGSC0003DMT400001905	Potato	plastid	49.82	48.75
Bra024793.1-P	Field mustard	extracellular	33.09	32.04
Bra017269.1-P	Field mustard	plastid	30.91	25.68
Bra012812.1-P	Field mustard	cytosol	21.45	17.61
Bra036876.1-P	Field mustard	cytosol	25.45	14.2
Bra004800.1-P	Field mustard	cytosol	22.18	13.65
Bra028970.1-P	Field mustard	plastid	24.36	13.62
Bra003005.1-P	Field mustard	plastid	22.55	12.42
Bra036228.1-P	Field mustard	golgi, mitochondrion, plastid	22.18	11.49
Bra031213.1-P	Field mustard	plastid	24.73	10.85

Protein Annotations

Gene3D:1.25.70.10	MapMan:15.6.2.2	EnsemblPlantsGene:Bra022367	EnsemblPlants:Bra022367.1	EnsemblPlants:Bra022367.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003690	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006355	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009628	GO:GO:0009987
GO:GO:0042646	GO:GO:0071472	InterPro:IPR038538	UniProt:M4E0S0	InterPro:MTERF	InterPro:MTERF_sf
PFAM:PF02536	PANTHER:PTHR13068	PANTHER:PTHR13068:SF19	SMART:SM00733	UniParc:UPI000254805D	SEG:seg

Description

AT3G18870 (E=1e-127) | mitochondrial transcription termination factor-related / mTERF-related

Coordinates

chrA05:+:18134804..18135631

Molecular Weight (calculated)

31212.0 Da

IEP (calculated)

10.290

GRAVY (calculated)

-0.223

Length

275 amino acids

Sequence
(BLAST)

001: MATVTASLRL QPLSSLSSSS SPPPSSRPLY LKFHTSHREN LRYLSSLGVI PQNPRLAPPV DNLPAILSAV NFLKSKGISD GDFPRLVYLC PQLFSPTFSI
101: SETDPVFDFL AGELGASAAE SRGLIVNCPS LLLSDVEYCL RPTLVYLKEL GVKNLNRASK TNAHVLNTRM EKLRAKVRFL KSIGFEHEEA ARVCGRIPAI
201: FGYSVEDNLR PKFEFLVYDM ERELEELKKF PQYFGFSLGR RIKPRHWHLK KKGVRVSLSR LLMWGDHKFY SKWKP

Best Arabidopsis Sequence Match ( AT3G18870.1 )
(BLAST)

001: MAVIASLHHL QPLSSFSSPP SPSSSKPLYL KFQTSHRENL RHLSSLGIVP QNPRLAPPAN DLSVILSAVN LLKSKGISDE DFPRLVFLCP QLFSPTFDIS
101: KLDPVFDFLT GELGASAEES RGLIVNCPNI LFSDVEYCLR PTLVYLKELG VRNLNRASKT NAHVLNTRVE KLRAKMRFLK SIGFEHEEAA RVCGRIPAIF
201: GYSVEDNLRP KFEFLVYDME RELEELKKFP QYFAFSLGKR IRPRHWHLKK KNVRVSLSRM LMWGDQKFYS KWKP

Arabidopsis Description

At3g18870 [Source:UniProtKB/TrEMBL;Acc:Q9LHN2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.