Factsheet for PGSC0003DMT400001905

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
nucleus 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	plastid
Plant-mPloc:	nucleus, plasma membrane, plastid
Predotar:	mitochondrion
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g109550.2.1	Tomato	mitochondrion	93.24	89.12
KRH40190	Soybean	cytosol	25.27	64.55
VIT_03s0063g02460.t01	Wine grape	plastid	59.07	60.14
KRH01028	Soybean	plastid	52.31	53.65
AT3G18870.1	Thale cress	plastid	50.18	51.46
GSMUA_Achr2P08550_001	Banana	plastid	50.18	51.46
CDX92284	Canola	plastid	49.11	50.18
CDX99300	Canola	plastid	49.11	50.18
Bra022367.1-P	Field mustard	plastid	48.75	49.82
PGSC0003DMT400047490	Potato	mitochondrion	12.81	38.3
PGSC0003DMT400075363	Potato	cytosol	22.06	29.81
PGSC0003DMT400085903	Potato	plastid	29.89	26.25
PGSC0003DMT400080487	Potato	plastid	28.83	26.13
PGSC0003DMT400047424	Potato	plastid	29.54	26.1
PGSC0003DMT400076662	Potato	cytosol	18.86	18.15
PGSC0003DMT400059549	Potato	cytosol	19.22	16.46
PGSC0003DMT400052092	Potato	mitochondrion	21.35	12.4
PGSC0003DMT400007420	Potato	mitochondrion	19.22	11.32
PGSC0003DMT400023772	Potato	plastid	23.13	10.89
PGSC0003DMT400001588	Potato	plastid	19.57	10.62
PGSC0003DMT400023814	Potato	mitochondrion	18.51	10.57
PGSC0003DMT400001916	Potato	plastid	21.71	8.85

Protein Annotations

EntrezGene:107058496	MapMan:15.6.2.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003690
GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	UniProt:M0ZJA4	InterPro:MTERF	PFAM:PF02536	EnsemblPlantsGene:PGSC0003DMG400000721	PGSC:PGSC0003DMG400000721
EnsemblPlants:PGSC0003DMT400001905	PANTHER:PTHR13068	PANTHER:PTHR13068:SF19	SMART:SM00733	UniParc:UPI00029521DD	RefSeq:XP_015159771.1
SEG:seg	:	:	:	:	:

Description

By genefinder and genscan [Source:PGSC_GENE;Acc:PGSC0003DMG400000721]

Coordinates

chr1:-:85866601..85867579

Molecular Weight (calculated)

32631.6 Da

IEP (calculated)

9.307

GRAVY (calculated)

-0.156

Length

281 amino acids

Sequence
(BLAST)

001: MWLKEAMFLC SSIPTTKNFF FISATNIPFS SSPNPPFLRF HTSHRENLRY LKSLGIIKPG TKTYKTNPSP ESLSQILSTV NFLNSQGFSQ ADISRIALVC
101: DHVFTPEFSV ESVFDFFKFD LAATPEETQG LILRCPQILE SNVQFCLRPT LLYLKELDIG NLNLPTNLNA HLLNTRVDKL QEKVTFLQGI GLSYEESAKF
201: CARFPAIFGY SIEHNLWPKY EYLVEGMKKD IEELKLFPQY FAFSLRNRIV PRHLHLKERN VAIPVKRMLL WSDQRFYAKW K

Best Arabidopsis Sequence Match ( AT3G18870.1 )
(BLAST)

001: MAVIASLHHL QPLSSFSSPP SPSSSKPLYL KFQTSHRENL RHLSSLGIVP QNPRLAPPAN DLSVILSAVN LLKSKGISDE DFPRLVFLCP QLFSPTFDIS
101: KLDPVFDFLT GELGASAEES RGLIVNCPNI LFSDVEYCLR PTLVYLKELG VRNLNRASKT NAHVLNTRVE KLRAKMRFLK SIGFEHEEAA RVCGRIPAIF
201: GYSVEDNLRP KFEFLVYDME RELEELKKFP QYFAFSLGKR IRPRHWHLKK KNVRVSLSRM LMWGDQKFYS KWKP

Arabidopsis Description

At3g18870 [Source:UniProtKB/TrEMBL;Acc:Q9LHN2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.