Factsheet for PGSC0003DMT400076662

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g015640.1.1	Tomato	plastid	99.66	60.37
KRH73870	Soybean	plastid	80.82	48.16
KRH14270	Soybean	plastid	80.82	47.48
GSMUA_Achr3P29890_001	Banana	plastid	78.77	45.36
Bra028970.1-P	Field mustard	plastid	76.37	45.33
CDY36755	Canola	nucleus, vacuole	76.37	45.23
CDY66686	Canola	extracellular, vacuole	76.37	45.23
AT5G55580.1	Thale cress	plastid	76.71	45.16
EER97446	Sorghum	mitochondrion	73.63	42.49
TraesCS2D01G198500.1	Wheat	plastid	67.12	41.61
HORVU2Hr1G036490.17	Barley	mitochondrion	71.58	41.55
Os07t0583200-01	Rice	endoplasmic reticulum, plastid	71.58	41.55
TraesCS2B01G218100.1	Wheat	plastid	70.55	41.28
TraesCS2A01G189200.1	Wheat	plastid	70.21	41.08
VIT_19s0090g01770.t01	Wine grape	plastid	68.49	39.76
Zm00001d006700_P003	Maize	mitochondrion, plastid	72.26	36.63
PGSC0003DMT400047490	Potato	mitochondrion	9.25	28.72
PGSC0003DMT400075363	Potato	cytosol	19.86	27.88
PGSC0003DMT400080487	Potato	plastid	21.23	20.0
PGSC0003DMT400047424	Potato	plastid	21.58	19.81
PGSC0003DMT400085903	Potato	plastid	21.23	19.38
PGSC0003DMT400059549	Potato	cytosol	21.58	19.21
PGSC0003DMT400001905	Potato	plastid	18.15	18.86
PGSC0003DMT400052092	Potato	mitochondrion	22.26	13.43
PGSC0003DMT400001588	Potato	plastid	22.95	12.93
PGSC0003DMT400023814	Potato	mitochondrion	20.89	12.4
PGSC0003DMT400007420	Potato	mitochondrion	20.21	12.37
PGSC0003DMT400023772	Potato	plastid	21.92	10.72
PGSC0003DMT400001916	Potato	plastid	22.26	9.43

Protein Annotations

Gene3D:1.25.70.10	MapMan:15.6.2.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003690
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139
GO:GO:0006355	GO:GO:0006950	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009507	GO:GO:0009536	GO:GO:0009628	GO:GO:0009651	GO:GO:0009658	GO:GO:0009987
GO:GO:0016043	GO:GO:0048364	GO:GO:0048367	InterPro:IPR038538	UniProt:M1CX64	InterPro:MTERF
InterPro:MTERF_sf	PFAM:PF02536	EnsemblPlantsGene:PGSC0003DMG401029813	PGSC:PGSC0003DMG401029813	EnsemblPlants:PGSC0003DMT400076662	PANTHER:PTHR13068
PANTHER:PTHR13068:SF13	SMART:SM00733	UniParc:UPI0002956B0C	:	:	:

Description

Mitochondrial transcription termination factor family protein / mTERF family protein [Source:PGSC_GENE;Acc:PGSC0003DMG401029813]

Coordinates

chr12:+:9745062..9747163

Molecular Weight (calculated)

33937.5 Da

IEP (calculated)

10.472

GRAVY (calculated)

-0.284

Length

292 amino acids

Sequence
(BLAST)

001: MYERHMPSLQ INKSSAQERL EFLLSVGVKH KDIRKIILRQ PQLLEYTVEN NLKSHVTFLT SLGIPDSRIG QIITATPSLF SYSVENSLKP TVTYLLEEVG
101: IEKNDLAKVV QLSPQILVQR INTSWTARFN FLTRELNAPR DSIVKMVRKH PQLLHYSIED GLLPRINFFR SIGMRNSEIV KVLTSITQVF SLSLEGNLKP
201: KYSYLVNELG NEVRSLTKYP MYLSLSLDQR IRPRHMFLVS LKRAPKGPFP LSSLVPTDES FCQQWARTSV DKYLDFRQRL LLKELARKYE RR

Best Arabidopsis Sequence Match ( AT5G55580.2 )
(BLAST)

001: MILLRCGFVC EGVKKGIVKP EESETDEDDL DLGISPNATS EKKKESWRLD GRGKMSSRKY VEKLYPRLAE EIDIDPKCVP LLDYLSTFGL KESHFVQMYE
101: RHMPSLQINV FSAQERLDYL LSVGVKHRDI KRMLLRQPQI LQYTVENNLK AHISFLMGLG IPNSKIGQIV AATPSLFSYS VENSLRPTIR YLIEEVGIKE
201: TDVGKVVQLS PQILVQRLDI TWNTRYMFLS KELGAPRDSV VKMVKKHPQL LHYSIDDGFL PRINFLRSIG MCNSDILKVL TSLTQVLSLS LEDNLKPKYM
301: YLVNELNNEV HILTKYPMYL SLSLDQRIRP RHRFLVELKK VRKGPFPLSS LVPNDESFCQ QWAGTSVDTY LAFRQRLLLK EFANKYDKRG

Arabidopsis Description

MTERF9Transcription termination factor MTERF9, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FM80]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.