Factsheet for PGSC0003DMT400075363

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400085903	Potato	plastid	89.9	58.44
PGSC0003DMT400047490	Potato	mitochondrion	21.15	46.81
VIT_08s0007g02500.t01	Wine grape	plastid	64.42	39.65
KRH13722	Soybean	plastid	63.46	38.82
KRH43735	Soybean	plastid	62.5	38.46
AT2G36000.1	Thale cress	plastid	58.65	36.64
Bra017269.1-P	Field mustard	plastid	56.25	35.35
GSMUA_AchrUn_...	Banana	plastid	55.29	34.12
Os03t0360600-00	Rice	cytosol, mitochondrion	44.23	30.56
Zm00001d047442_P001	Maize	plastid	43.75	30.54
Zm00001d029242_P001	Maize	plastid	44.23	30.36
KXG39318	Sorghum	plastid	44.23	29.39
TraesCS4D01G156100.1	Wheat	mitochondrion	44.23	29.3
TraesCS1A01G084300.1	Wheat	mitochondrion	44.23	29.3
TraesCS4B01G156500.1	Wheat	mitochondrion	43.75	28.98
HORVU4Hr1G045210.1	Barley	plastid	44.23	27.14
PGSC0003DMT400080487	Potato	plastid	39.9	26.77
PGSC0003DMT400047424	Potato	plastid	37.5	24.53
PGSC0003DMT400001905	Potato	plastid	29.81	22.06
PGSC0003DMT400076662	Potato	cytosol	27.88	19.86
PGSC0003DMT400059549	Potato	cytosol	24.04	15.24
PGSC0003DMT400052092	Potato	mitochondrion	29.33	12.6
PGSC0003DMT400023814	Potato	mitochondrion	25.96	10.98
PGSC0003DMT400001588	Potato	plastid	25.48	10.23
PGSC0003DMT400007420	Potato	mitochondrion	22.12	9.64
PGSC0003DMT400001916	Potato	plastid	31.73	9.58
PGSC0003DMT400023772	Potato	plastid	26.92	9.38

Protein Annotations

Gene3D:1.25.70.10	MapMan:15.6.2.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003690
GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR038538	UniProt:M1CV14	InterPro:MTERF	InterPro:MTERF_sf	PFAM:PF02536
EnsemblPlantsGene:PGSC0003DMG400029310	PGSC:PGSC0003DMG400029310	EnsemblPlants:PGSC0003DMT400075363	PANTHER:PTHR13068	PANTHER:PTHR13068:SF46	SMART:SM00733
UniParc:UPI000294B02F	SEG:seg	:	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400029310]

Coordinates

chr12:-:57592579..57593838

Molecular Weight (calculated)

24444.1 Da

IEP (calculated)

9.014

GRAVY (calculated)

-0.130

Length

208 amino acids

Sequence
(BLAST)

001: MCPEILTAPI STTLRPAVTF LLREVHVTGE NLPGVLRRRP RLLTKCVDKH LRPTLYFLQS SIGIEDVSKC TSLLSCSVET KFIPRLDYFQ RIGFSRRDAK
101: VMFRRFPSLF CYSIEENLEP KFDYFVVEMG REMMELNVFP QYFSFSLEKR IKPRHMMCVE KGVCLSLPVM LKSHESRFRD RLEVCCSSSM PVRQSPFWYC
201: TKFDHNVT

Best Arabidopsis Sequence Match ( AT2G36000.1 )
(BLAST)

001: MQQEALSFLS SSLPSLHHNF PSLSRLRFNN FPALSFKPNT SSSSSSFFKS PDIPSLSSTT TTTTTTETLE SSIHEKLIYL DSLGIDFLTL INRHPPLLST
101: ALSAVESVVD YMTTPPINFT LQDFRRLVSM CPELLTSPLT SHTIPVITFL LREVGVDSIF DLRQALRRRP RLLACSVDHQ LRPTLYFLQR IGILDPHKHT
201: YLLSCSVDNK LVPRIDYFEK LGFSRRSATA MFKRFPQLFN YSIAENYEPK LKYLMVEMGR DVREVLEFPQ YFSFSLENRI KPRHEACAAK GVRFPLPVML
301: KTNEAGFRDT LEVCCDSSPP LKTSRLVTVQ KDS

Arabidopsis Description

At2g36000/F11F19.9 [Source:UniProtKB/TrEMBL;Acc:Q9SJ50]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.