Factsheet for PGSC0003DMT400080487

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g021430.1.1	Tomato	plastid	96.13	97.39
AT2G34620.1	Thale cress	plastid	59.03	60.4
VIT_10s0003g04040.t01	Wine grape	plastid	67.42	59.38
KRH12828	Soybean	plastid	57.74	59.27
KRH37793	Soybean	plastid	58.39	56.21
CDX84297	Canola	plastid	58.06	54.55
PGSC0003DMT400047490	Potato	mitochondrion	16.13	53.19
GSMUA_Achr6P31220_001	Banana	plastid	36.13	49.78
Os03t0785200-01	Rice	plastid	49.35	49.35
OQU90879	Sorghum	plastid	48.71	47.34
TraesCS5B01G425900.1	Wheat	plastid	48.71	46.04
TraesCS5A01G423600.1	Wheat	plastid	47.42	45.94
Zm00001d011574_P001	Maize	cytosol, extracellular, plastid	22.58	45.75
TraesCS5D01G432100.1	Wheat	plastid	48.06	45.57
PGSC0003DMT400047424	Potato	plastid	41.61	40.57
PGSC0003DMT400075363	Potato	cytosol	26.77	39.9
PGSC0003DMT400085903	Potato	plastid	35.48	34.38
PGSC0003DMT400001905	Potato	plastid	26.13	28.83
PGSC0003DMT400076662	Potato	cytosol	20.0	21.23
PGSC0003DMT400059549	Potato	cytosol	21.29	20.12
PGSC0003DMT400052092	Potato	mitochondrion	25.16	16.12
PGSC0003DMT400007420	Potato	mitochondrion	19.03	12.37
PGSC0003DMT400023814	Potato	mitochondrion	19.35	12.2
PGSC0003DMT400001588	Potato	plastid	20.0	11.97
PGSC0003DMT400001916	Potato	plastid	25.48	11.47
PGSC0003DMT400023772	Potato	plastid	20.97	10.89

Protein Annotations

Gene3D:1.25.70.10	EntrezGene:102604575	MapMan:15.6.2.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003690	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR038538	UniProt:M1D3K5	InterPro:MTERF	InterPro:MTERF_sf
PFAM:PF02536	EnsemblPlantsGene:PGSC0003DMG400031337	PGSC:PGSC0003DMG400031337	EnsemblPlants:PGSC0003DMT400080487	PANTHER:PTHR13068	PANTHER:PTHR13068:SF78
SMART:SM00733	UniParc:UPI000296C006	RefSeq:XP_006361545.1	SEG:seg	:	:

Description

MTERF [Source:PGSC_GENE;Acc:PGSC0003DMG400031337]

Coordinates

chr2:+:11574610..11575936

Molecular Weight (calculated)

35214.7 Da

IEP (calculated)

8.477

GRAVY (calculated)

-0.149

Length

310 amino acids

Sequence
(BLAST)

001: MTSAATSFHS CLCFSVQKLS PSSSASSSSS SCSDQQMSLL SPTKPKSILQ KNPLYQPTHK NISLQFKEKI LCLEIMGVDS GKALSQNPCL HTASLHAIHD
101: IITFLQSKGL YQKDFARIFG MCPTILTSDI RSELNPVFNF LSKDLRVPED YFRKVINKCP RLLICSVKDQ LKPTLFYLQR LGFTDVHHLA YQDPILLVSS
201: VENTLIPKLH YLVSLGFTRR EAVEMTLRCP GLFTFSIQNN FKPKFDYFSQ EMEGELDELK DFPQYFAFSL DKRIKPRHIQ LVDNGVSIPL SLMLKTTDEE
301: FNHLISQKTG

Best Arabidopsis Sequence Match ( AT2G34620.1 )
(BLAST)

001: MSAALSSSLY ISPKKPSCPQ QSQSTFLSTK PTTIKTNLHS HPLFTVADQT VTLQMKEKIL CLELMGIDSG KALSLNPCLC SAPLDSIQSV LHFLQSKGIY
101: PNDLPRILGM CPKILTSDVR TELYPVFMFL SNDLHVPENA FRRVIKKCPR LLISSVEDQL KPALFYLQRL GLKDLEALAY QDPILLVSSV EHTLIPKLRF
201: LESIGFSRPE AIGMILRCPA LFTFSIENNF KPKLDYFMSE IKGKLENLKE FPQYFAFSLE KRIKPRHLES MERGLELPLS LMLKSTDEEF EQLLTNPSSV
301: ANV

Arabidopsis Description

Mitochondrial transcription termination factor family protein [Source:UniProtKB/TrEMBL;Acc:O64685]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.