Factsheet for PGSC0003DMT400023772

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
nucleus 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	golgi, nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Plant-mPloc:	nucleus, plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g124040.2.1	Tomato	golgi, plastid	91.46	95.12
VIT_09s0054g01030.t01	Wine grape	plastid	57.12	56.74
AT1G78930.1	Thale cress	plastid	49.25	49.75
GSMUA_Achr3P27780_001	Banana	plastid	50.75	49.67
HORVU5Hr1G089290.3	Barley	cytosol	42.04	46.83
KRH09594	Soybean	cytosol	45.73	46.11
TraesCS5D01G372800.1	Wheat	plastid	43.05	43.93
OQU89932	Sorghum	plastid	44.72	43.84
Zm00001d027230_P001	Maize	plastid	44.89	43.72
Os09t0560100-00	Rice	plasma membrane, plastid	44.72	43.63
TraesCS5B01G365700.1	Wheat	plastid	42.71	43.59
TraesCS5A01G363600.1	Wheat	plastid	39.87	41.61
Zm00001d021376_P001	Maize	cytosol	44.05	40.97
HORVU0Hr1G013680.1	Barley	mitochondrion	15.41	39.66
PGSC0003DMT400047490	Potato	mitochondrion	5.86	37.23
PGSC0003DMT400075363	Potato	cytosol	9.38	26.92
PGSC0003DMT400059549	Potato	cytosol	13.23	24.09
PGSC0003DMT400001905	Potato	plastid	10.89	23.13
PGSC0003DMT400047424	Potato	plastid	11.89	22.33
PGSC0003DMT400076662	Potato	cytosol	10.72	21.92
PGSC0003DMT400085903	Potato	plastid	11.39	21.25
PGSC0003DMT400080487	Potato	plastid	10.89	20.97
PGSC0003DMT400052092	Potato	mitochondrion	16.08	19.83
PGSC0003DMT400023814	Potato	mitochondrion	15.08	18.29
PGSC0003DMT400007420	Potato	mitochondrion	13.23	16.56
PGSC0003DMT400001916	Potato	plastid	18.59	16.11
PGSC0003DMT400001588	Potato	plastid	13.23	15.25

Protein Annotations

Gene3D:1.25.70.10	EntrezGene:102600438	MapMan:15.6.2.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003690	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507
GO:GO:0009536	GO:GO:0009987	InterPro:IPR038538	UniProt:M1AIZ0	InterPro:MTERF	InterPro:MTERF_sf
PFAM:PF02536	EnsemblPlantsGene:PGSC0003DMG400009194	PGSC:PGSC0003DMG400009194	EnsemblPlants:PGSC0003DMT400023772	PANTHER:PTHR13068	PANTHER:PTHR13068:SF42
SMART:SM00733	UniParc:UPI000296C26B	RefSeq:XP_006342847.1	RefSeq:XP_015162193.1	SEG:seg	:

Description

YUP8H12R.46 protein [Source:PGSC_GENE;Acc:PGSC0003DMG400009194]

Coordinates

chr3:-:62122431..62129774

Molecular Weight (calculated)

68158.9 Da

IEP (calculated)

9.117

GRAVY (calculated)

-0.048

Length

597 amino acids

Sequence
(BLAST)

001: MPSHCLLNYL SFAVPNSKPQ LFPFPFSCHC NTFFYCNLIR PEQVCHKLRN FAPLVPLAAR SSSSKGIEDT EEVIAEAREA VSYYLQELGV SHKESIEIAL
101: NSPNYVSMLI DSVRELDEFS LWNSTDFEKA YDPVPAIPPF KSKVYLMAKQ KGDKGMLPFL ESIGLTLSSA THLARYLSSN SLFQTLPTLI NKVKYVKKIF
201: FANSDDGGHI ARNARQMMMH LSISIDEDVQ QTLSFFEKIQ ARRGGLHLLG SQDASFRHLI ESFPRLLLLP KESHMKRLMV FLDDIGVVEG CKRQILLLFP
301: PIIFYDIEKD VRPRLQAILK DGLEAKDFGQ MLLKYPWILS RSILQNYENI LIFFDDEKVP KISVAQAIKS CPLLLGLSVN KLKLVVEQLR DFGIRNQKLG
401: KVIATSPQLL LQKPQEFSQV VCFLRDLGLD DDIIGRILGR CPEIFASSIG RTLERKLNFL MGIGVSRSHL PRIIKKYPEF FVCDIHRALR PRMTYLMHVG
501: LSKREVALMV CRFSPLLGYS IDEVLKPKVE FLMNSMGKPI SDVVEYPRYF SYSLEKKIKP RFWVLKGRNM ECSLKSMLGK NDEEFAAEFG EGGKMPL

Best Arabidopsis Sequence Match ( AT1G78930.1 )
(BLAST)

001: MELLHTSCNF ETLTLISPPL KSCNFSSSSL FFSPRRVTLF PAYHSGRVTV SASLQHGDSN FSSNSSQTNQ EAQNSIAGFL RRDTGLSEAD SDFISSNCPK
101: YTRMIVEGVR DLEEWNSWKG SGESERVEEG LGFKEKVIYM VKQKGDGGKV AFLESLGLSL SSAMYLAHYV SSESLPILLD KVKYLKEIFF SGSDEKGLVG
201: KYARRMMLYL SIPIDEDVQQ TLSFFEKIEA RRGGLDMLGS VDASFRFLLE SFPRLLLLSE ENDMKPMVEF LESIGIPKYC LGKVLLLYPP IMLGKTEEIK
301: RRVATAMEKV SVVNKDSGKL LLKYPWILSP SIQENYSHIG SFFYSESVLK MDIDHAIRRW PLLLGCSASN MEMMVKEFDK LGVRDKRMGK VIPKMPQLLL
401: CKPQEFLKVV CFLEDLGFQK EIVGQILCRC PEIFGCSIEK TLQKKLIFLT RFGVSTTHFP RIIKKYPEFL IYDADKTVLP RLKYLMEIGI SEREIAFMIR
501: KFSPILGYSI DKVLRPKFEF LVNSMEKPVR EVIEYPRYFS YSLEKRIKPR FRVLKGRNIE CTLQEMLGKN DEEFAADFLG LGELQTHSEI S

Arabidopsis Description

Mitochondrial transcription termination factor family protein [Source:UniProtKB/TrEMBL;Acc:Q0WRV2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.