CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
peroxisome 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d027230_P001	Maize	plastid	91.63	91.03
Zm00001d021376_P001	Maize	cytosol	90.48	85.83
HORVU5Hr1G089290.3	Barley	cytosol	70.77	80.41
TraesCS5D01G372800.1	Wheat	plastid	73.73	76.75
TraesCS5B01G365700.1	Wheat	plastid	72.58	75.56
Os09t0560100-00	Rice	plasma membrane, plastid	75.04	74.67
TraesCS5A01G363600.1	Wheat	plastid	68.64	73.08
GSMUA_Achr3P27780_001	Banana	plastid	53.69	53.61
VIT_09s0054g01030.t01	Wine grape	plastid	45.81	46.42
Solyc03g124040.2.1	Tomato	golgi, plastid	42.53	45.12
PGSC0003DMT400023772	Potato	plastid	43.84	44.72
AT1G78930.1	Thale cress	plastid	42.86	44.16
KRH09594	Soybean	cytosol	39.9	41.05
EES14251	Sorghum	cytosol	13.96	25.45
KXG39318	Sorghum	plastid	11.17	21.73
OQU90879	Sorghum	plastid	11.0	21.0
OQU85198	Sorghum	mitochondrion, plastid	9.52	20.79
KXG30576	Sorghum	cytosol	16.42	20.33
EES07645	Sorghum	mitochondrion	15.6	19.43
OQU77962	Sorghum	plastid	15.11	18.47
EER97446	Sorghum	mitochondrion	13.79	16.6
OQU88410	Sorghum	plastid	14.45	14.62

Protein Annotations

Gene3D:1.25.70.10	MapMan:15.6.2.2	EntrezGene:8077262	UniProt:C5X8D7	ProteinID:EER97182.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003690	GO:GO:0003723	GO:GO:0003727	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0008380	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536
GO:GO:0009658	GO:GO:0009987	GO:GO:0016043	GO:GO:0019843	GO:GO:0032502	GO:GO:0042255
InterPro:IPR038538	InterPro:MTERF	InterPro:MTERF_sf	EnsemblPlants:OQU89932	ProteinID:OQU89932	ProteinID:OQU89932.1
PFAM:PF02536	PANTHER:PTHR13068	PANTHER:PTHR13068:SF42	SMART:SM00733	EnsemblPlantsGene:SORBI_3002G296100	UniParc:UPI0001A83AD7
RefSeq:XP_002460661.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:67310486..67315410

Molecular Weight (calculated)

67999.0 Da

IEP (calculated)

10.035

GRAVY (calculated)

0.038

Length

609 amino acids

Sequence
(BLAST)

001: MATAAATFGL LRPPTRTPAI SQLYILPLPT QPHSKTHPRP LPLPRRRRGG PIAAFPNATS SSTNASASPT YDVREAEAAV AELLREGGAS PADAAAIATR
101: APAYAAMLAD GVRELDELGL WASWSSGAGA RLSLSGAVEM EVGRLGFRRK VYLMGRSRRD HGVVPLLESL GVRLSSAKLI APYVAAAGLT VLIDRVKFLK
201: EMLFSSSDYA ILIGRNAKRM MIHLSIPADD ALQSTLSFFE KMEARYGGIS MLGHGDVSFP YLIESFPMLL LCSEDNHLKP LVDFLEHIGI PKTKIASVLL
301: LFPPIILSDV ENDIKPRIRE WEKAGMEQDY IGRMLLKYPW ILSTSVIENY SQMLLFFNRK KISSTVLGIA VKSWPHILGC SSKRMNSALE LFHDLGISKK
401: MVVPVITSSP QLLLRKPDQF MQNVLLFREM GVDKKTTGKI LCRAPEIFAS NVDSTLKKKI DFLINFGVSK HHLPRIIRKY PELLLLDINR TLLPRMNYLL
501: EVGLSKKDIC SMIFRFSPLL GYSIELVMKP KLEFLLRTMK KPLKAVVEYP RYFSYSLEGK IKPRFWVLQS RNIDCTLTEM FAKNDELFAE EYLGLDGLLE
601: KPLQSSIGG

Best Arabidopsis Sequence Match ( AT1G78930.1 )
(BLAST)

001: MELLHTSCNF ETLTLISPPL KSCNFSSSSL FFSPRRVTLF PAYHSGRVTV SASLQHGDSN FSSNSSQTNQ EAQNSIAGFL RRDTGLSEAD SDFISSNCPK
101: YTRMIVEGVR DLEEWNSWKG SGESERVEEG LGFKEKVIYM VKQKGDGGKV AFLESLGLSL SSAMYLAHYV SSESLPILLD KVKYLKEIFF SGSDEKGLVG
201: KYARRMMLYL SIPIDEDVQQ TLSFFEKIEA RRGGLDMLGS VDASFRFLLE SFPRLLLLSE ENDMKPMVEF LESIGIPKYC LGKVLLLYPP IMLGKTEEIK
301: RRVATAMEKV SVVNKDSGKL LLKYPWILSP SIQENYSHIG SFFYSESVLK MDIDHAIRRW PLLLGCSASN MEMMVKEFDK LGVRDKRMGK VIPKMPQLLL
401: CKPQEFLKVV CFLEDLGFQK EIVGQILCRC PEIFGCSIEK TLQKKLIFLT RFGVSTTHFP RIIKKYPEFL IYDADKTVLP RLKYLMEIGI SEREIAFMIR
501: KFSPILGYSI DKVLRPKFEF LVNSMEKPVR EVIEYPRYFS YSLEKRIKPR FRVLKGRNIE CTLQEMLGKN DEEFAADFLG LGELQTHSEI S

Arabidopsis Description

Mitochondrial transcription termination factor family protein [Source:UniProtKB/TrEMBL;Acc:Q0WRV2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.