CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d010340_P001	Maize	plastid	93.57	94.33
TraesCS1B01G265700.1	Wheat	cytosol	74.5	85.68
TraesCS1A01G252300.1	Wheat	cytosol	68.07	85.61
HORVU1Hr1G061210.8	Barley	plastid	84.34	84.51
TraesCS1D01G252000.1	Wheat	plastid	84.54	84.2
Os05t0404000-01	Rice	plastid	85.34	83.66
PGSC0003DMT400007420	Potato	mitochondrion	58.43	61.01
VIT_07s0104g00720.t01	Wine grape	mitochondrion	59.44	56.38
KRH72610	Soybean	plastid	58.63	56.37
GSMUA_Achr3P24870_001	Banana	cytosol, mitochondrion, plastid	43.98	56.15
Solyc04g005630.2.1	Tomato	nucleus	59.64	55.0
CDY21931	Canola	golgi, mitochondrion, plastid	57.23	53.88
Bra036228.1-P	Field mustard	golgi, mitochondrion, plastid	56.83	53.3
CDY22091	Canola	golgi, mitochondrion, plastid	56.83	53.3
AT4G02990.1	Thale cress	plastid	57.03	52.5
EES07645	Sorghum	mitochondrion	44.18	44.99
EES14251	Sorghum	cytosol	16.67	24.85
KXG39318	Sorghum	plastid	14.66	23.32
OQU90879	Sorghum	plastid	12.85	20.06
OQU85198	Sorghum	mitochondrion, plastid	11.04	19.71
KXG30576	Sorghum	cytosol	16.87	17.07
EER97446	Sorghum	mitochondrion	16.67	16.4
OQU88410	Sorghum	plastid	19.08	15.78
OQU89932	Sorghum	plastid	18.47	15.11

Protein Annotations

Gene3D:1.25.70.10	MapMan:15.6.2.2	MapMan:16.12.2.1.1.6	EntrezGene:8076879	UniProt:A0A1Z5R2G2	GO:GO:0000003
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003690	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006355	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008380	GO:GO:0009058	GO:GO:0009536	GO:GO:0009790
GO:GO:0009791	GO:GO:0009793	GO:GO:0009987	GO:GO:0032502	GO:GO:0042793	GO:GO:0042794
InterPro:IPR038538	InterPro:MTERF	InterPro:MTERF_sf	EnsemblPlants:OQU77962	ProteinID:OQU77962	ProteinID:OQU77962.1
PFAM:PF02536	PANTHER:PTHR13068	PANTHER:PTHR13068:SF24	SMART:SM00733	EnsemblPlantsGene:SORBI_3009G131600	UniParc:UPI0001A886EC
RefSeq:XP_002439769.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:48524591..48531678

Molecular Weight (calculated)

55927.9 Da

IEP (calculated)

5.486

GRAVY (calculated)

-0.145

Length

498 amino acids

Sequence
(BLAST)

001: MMKSLLFSVH PTPPLLPTPR LRRLLRFRAS SSASASASAP PRADRRSPRP APSRRPSSSS LYARPSLLEM ERERAARRAD VDAFLTSLGV DPGELAGLEL
101: PVTVDVMRER AEFLGSLGLT REDLAAYPLA LGCSVRKNMV PVLDYLGKLG VRRDALPDLL RRYPQVLHAS VVVDLAPVVK YLQGMDVRPA DVPRVLERYP
201: ELLGFKLEGT MSTSVAYLVG IGVGRRQIGS VITRFPEVLG MRVGKIIKPF VEHLEGIGLQ RLAVARIIEK KPYVLGFGLE EKVKPNTEAL MDFGVRKEAL
301: ASIVMQYPDV LGLELRDKLV AQQSLFESSI LVSREDFGRV VERMPQAISL GRAAVQKHVN FLTACGFMLS QVSKMVVACP QLLALNMDIM RMNFEYFKNE
401: MERDLEELVE FPAFFTYGLE STVRPRHEMV SQKGFTCSLA WLLNCSDAKF DERMKYDTIG VEEMEREDSS DMNASMEEVE SEEYEDSDYD DSDDEFVR

Best Arabidopsis Sequence Match ( AT4G02990.1 )
(BLAST)

001: MKIRFCNGFT KPGFLLVHFE PPSFFAVRSR SLSDSTYGNL CNHKKRPGTG IGLTVQCAIA NRRFSSRSLD SPRRERSSRS SSSSGRDRDR DKDKGRDSKS
101: LYSRPSLLDM NKEKAANRAK VYEFLRGIGI VPDELDGLEL PVTADVMKER VEFLHKLGLT IEDINNYPLV LGCSVKKNMV PVLDYLGKLG VRKSTFTEFL
201: RRYPQVLHSS VVIDLAPVVK YLQGLDIKPS DVPRVLERYP EVLGFKLEGT MSTSVAYLVG IGVARREIGG ILTRYPEILG MRVARIIKPL VEYLEVLGIP
301: RLAAARLIEK RPHILGFELD DTVKPNVQIL QDFNVRETSL PSIIAQYPEI IGIDLKPKLD TQRKLLCSAI HLNPEDLGSL IERMPQFVSL SESPMLKHID
401: FLTKCGFSID QTREMVIGCP QVLALNLGIM KLSFEYFQKE MKRPLQDLVD FPAFFTYGLE STVKPRHKKI IKKGIKCSLA WMLNCSDEKF EQRMSYDTID
501: IEEVETDPSS FDMNTLMQPE REEESDSEYE EEEDDDDEEF A

Arabidopsis Description

MTERF4Transcription termination factor MTERF4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9ZT96]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.