CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, golgi, plastid

Predictor Summary:

plastid 3
mitochondrion 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, mitochondrion, plastid
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY22091	Canola	golgi, mitochondrion, plastid	95.84	95.48
AT4G02990.1	Thale cress	plastid	81.47	79.67
PGSC0003DMT400007420	Potato	mitochondrion	62.76	69.6
KRH72610	Soybean	plastid	64.46	65.83
VIT_07s0104g00720.t01	Wine grape	mitochondrion	64.46	64.95
Solyc04g005630.2.1	Tomato	nucleus	64.27	62.96
TraesCS2A01G284000.1	Wheat	cytosol	15.69	61.48
TraesCS1A01G252300.1	Wheat	cytosol	44.8	59.85
TraesCS1B01G265700.1	Wheat	cytosol	48.58	59.35
OQU77962	Sorghum	plastid	53.88	57.23
GSMUA_Achr3P24870_001	Banana	cytosol, mitochondrion, plastid	41.59	56.41
Zm00001d010340_P001	Maize	plastid	52.55	56.28
Os05t0404000-01	Rice	plastid	53.5	55.71
HORVU1Hr1G061210.8	Barley	plastid	51.98	55.33
TraesCS1D01G252000.1	Wheat	plastid	52.17	55.2
CDX79786	Canola	mitochondrion	41.21	44.22
CDY17890	Canola	mitochondrion	40.26	42.77
CDX90610	Canola	cytosol	14.74	23.28
CDY29073	Canola	cytosol, plastid	14.56	22.99
CDX99300	Canola	plastid	11.53	22.18
CDX92284	Canola	plastid	11.34	21.82
CDY03022	Canola	extracellular	11.34	21.13
CDY45184	Canola	extracellular, mitochondrion	11.34	21.05
CDX84297	Canola	plastid	13.04	20.91
CDY66686	Canola	extracellular, vacuole	16.26	17.44
CDY36755	Canola	nucleus, vacuole	16.07	17.24
CDY13794	Canola	plastid	19.47	16.43
CDY66820	Canola	plastid	18.71	15.92
CDY29749	Canola	cytosol	13.8	14.9
CDY16267	Canola	cytosol	13.42	14.64
CDY18308	Canola	plastid	12.85	13.63
CDY14326	Canola	plastid	12.67	13.43

Protein Annotations

Gene3D:1.25.70.10	MapMan:15.6.2.2	MapMan:16.12.2.1.1.6	GO:A0A078G960	UniProt:A0A078G960	EnsemblPlants:CDY21931
ProteinID:CDY21931	ProteinID:CDY21931.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003690	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00018259001	InterPro:IPR038538	InterPro:MTERF	InterPro:MTERF_sf
PFAM:PF02536	PANTHER:PTHR13068	PANTHER:PTHR13068:SF24	SMART:SM00733	UniParc:UPI0004EDC423	SEG:seg

Description

BnaC09g00370DBnaC09g00370D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G960]

Coordinates

chrLK032126:+:191194..193326

Molecular Weight (calculated)

60287.5 Da

IEP (calculated)

6.728

GRAVY (calculated)

-0.287

Length

529 amino acids

Sequence
(BLAST)

001: MKLRLCSGLT KPGLLLVHFM PPSFHSLPYR HGGLGLNVRC AIASRRLSSN SPKRERLRRD NKDIGKKRDS PSSQSLYARP SLLEMNKEKA ANRAKVYDFL
101: RGVGIVPDEL DGLELPVTSD VMKERVDFLH KLGLTIEDIN NYPLVLGCSV KKNMVPVLDY LGKLGVRKST FTEFLRRYPQ VLHASVVIDL APVVKYLQGL
201: DIKPVDVPRV LERYPEVLGF KLEGTMSTSV AYLIGIGVAR REIGGILTRY PEVLGMRVAR VIKPLVEYLE GVGIPKLAIA RLIEKRPHIL GFELDDAVKR
301: NVQTLRDFNV REVYLPSVIA QYPEIMGIDL KPKLEAQREL LSSVIDLNPE DLGTLVERMP QFVSLSEAPM VKHVGFLKEC GFSVEQTREM VIGCPQVLAL
401: NIGIMKLSFE YFRKEMRRPL QDLVDFPAFF TYGLESTVKP RHKRIVKKGI KCSLAWMLNC SEEKFEQRMS YDTIDIEEVE SGPASFDMST LMQPEREEEE
501: EEESEYEEEE DDDEDEEFGT KRSNGRFRQ

Best Arabidopsis Sequence Match ( AT4G02990.1 )
(BLAST)

001: MKIRFCNGFT KPGFLLVHFE PPSFFAVRSR SLSDSTYGNL CNHKKRPGTG IGLTVQCAIA NRRFSSRSLD SPRRERSSRS SSSSGRDRDR DKDKGRDSKS
101: LYSRPSLLDM NKEKAANRAK VYEFLRGIGI VPDELDGLEL PVTADVMKER VEFLHKLGLT IEDINNYPLV LGCSVKKNMV PVLDYLGKLG VRKSTFTEFL
201: RRYPQVLHSS VVIDLAPVVK YLQGLDIKPS DVPRVLERYP EVLGFKLEGT MSTSVAYLVG IGVARREIGG ILTRYPEILG MRVARIIKPL VEYLEVLGIP
301: RLAAARLIEK RPHILGFELD DTVKPNVQIL QDFNVRETSL PSIIAQYPEI IGIDLKPKLD TQRKLLCSAI HLNPEDLGSL IERMPQFVSL SESPMLKHID
401: FLTKCGFSID QTREMVIGCP QVLALNLGIM KLSFEYFQKE MKRPLQDLVD FPAFFTYGLE STVKPRHKKI IKKGIKCSLA WMLNCSDEKF EQRMSYDTID
501: IEEVETDPSS FDMNTLMQPE REEESDSEYE EEEDDDDEEF A

Arabidopsis Description

MTERF4Transcription termination factor MTERF4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9ZT96]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.