CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plasma membrane 1
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra012812.1-P	Field mustard	cytosol	100.0	100.0
CDY29073	Canola	cytosol, plastid	98.21	98.21
AT4G38160.3	Thale cress	cytosol, nucleus, peroxisome	77.91	69.05
Solyc11g044360.1.1	Tomato	cytosol	58.81	62.15
PGSC0003DMT400059549	Potato	cytosol	59.4	60.67
KRH32500	Soybean	cytosol	58.51	58.51
GSMUA_AchrUn_...	Banana	cytosol	57.61	58.31
KRH19886	Soybean	cytosol	58.21	58.21
VIT_03s0038g04180.t01	Wine grape	cytosol, plastid	58.81	55.65
Os08t0515800-01	Rice	cytosol	53.13	53.45
GSMUA_Achr7P20690_001	Banana	cytosol	34.63	52.49
EES14251	Sorghum	cytosol	51.64	51.8
Zm00001d049743_P001	Maize	cytosol, mitochondrion, nucleus	51.34	51.5
TraesCS7B01G141200.1	Wheat	cytosol	50.75	51.05
TraesCS7A01G250000.3	Wheat	cytosol	50.75	51.05
TraesCS7D01G248600.1	Wheat	cytosol	46.57	50.16
HORVU7Hr1G051550.3	Barley	mitochondrion	51.34	44.44
CDY03022	Canola	extracellular	18.81	22.18
CDX99300	Canola	plastid	18.21	22.18
CDY45184	Canola	extracellular, mitochondrion	18.81	22.11
CDX92284	Canola	plastid	17.91	21.82
CDY16267	Canola	cytosol	25.37	17.53
CDY29749	Canola	cytosol	25.37	17.35
CDX84297	Canola	plastid	16.42	16.67
CDX79786	Canola	mitochondrion	22.99	15.62
CDY17890	Canola	mitochondrion	22.99	15.46
CDY21931	Canola	golgi, mitochondrion, plastid	23.28	14.74
CDY22091	Canola	golgi, mitochondrion, plastid	23.28	14.69
CDY14326	Canola	plastid	20.9	14.03
CDY18308	Canola	plastid	20.9	14.03
CDY66820	Canola	plastid	25.97	13.99
CDY13794	Canola	plastid	25.97	13.88
CDY66686	Canola	extracellular, vacuole	20.0	13.59
CDY36755	Canola	nucleus, vacuole	20.0	13.59

Protein Annotations

Gene3D:1.25.70.10	MapMan:15.6.2.2	GO:A0A078DN75	EnsemblPlants:CDX90610	ProteinID:CDX90610	ProteinID:CDX90610.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003690	GO:GO:0005488	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00151251001
InterPro:IPR038538	InterPro:MTERF	InterPro:MTERF_sf	PFAM:PF02536	PANTHER:PTHR13068	PANTHER:PTHR13068:SF5
SMART:SM00733	UniParc:UPI0002540768	:	:	:	:

Description

BnaA03g41710D

Coordinates

chrLK031863:-:1099928..1100935

Molecular Weight (calculated)

37595.2 Da

IEP (calculated)

9.473

GRAVY (calculated)

-0.051

Length

335 amino acids

Sequence
(BLAST)

001: MEVVTSTSSN SMSIKHFLKS KGFDEQSIDK MLTKCKHLEN AQTDVASQNW DYLTNTVGIQ DRKLPYIVSR CPKILTLRLH ERLVPMFECL SSLGRNPREV
101: TSAITKFPPI LAHSLEEKLC PLLAFFQALG VPESHLGKIL LFNPRLISYG IETKLAVIVS FLASLGLDKD SGVIGQVLVK HPFLMGYSVE KRLRPTTEFL
201: KSCVGLSDDG VVSVFVNHPQ VVCRDVGKIL RPNYEYLKEC GFGDAQIASM VAGYPPVLIK SVGNSLRPRI RFLVDVMGRG LDEVAGYPQF FQHGLKKKVE
301: SRYKVVKKSD VDCSLRDMLD CNNKKFHEKF GVLRV

Best Arabidopsis Sequence Match ( AT4G38160.2 )
(BLAST)

001: MEVTNTSSIM WFFRDKGFDD PSIDKMLRKC KQLEKAQSDV ASENWDYLSN IVGIQERKLP YIVSRCPKIL TLRLDERLIP MVECLSSLGR NPREVASAIT
101: KFPPILSHSV EEKLCPLLAF FQALGVPETQ LGKMILFNPR LISYSIDTKL TVIVSFLASL GLDQDGMIGK VLVKNPFLMG YSVDKRLRPT TEFLKSSVGL
201: SEDGIKSVVM NFPQLLCRDV NKILKPNYDY LKECGFGDSQ IATMVTGYPQ ILIKSVKNSL QPRIRFLVQV MGRGMDEVAS YPEFFHHGLK KKVESRFKLV
301: KKNNIDCSLR EMLDCNTKKF HEKFGFSEVF NCNQNGMYML LDKSVSLLAC DYCSNRQAKE VSA

Arabidopsis Description

pde191Mitochondrial transcription termination factor family protein [Source:UniProtKB/TrEMBL;Acc:F4JSY9]
SUBAcon: [cytosol,nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.