CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX79786	Canola	mitochondrion	95.38	96.35
AT2G44020.1	Thale cress	mitochondrion	87.35	85.8
VIT_11s0016g02240.t01	Wine grape	mitochondrion	72.69	75.26
KRH60420	Soybean	cytosol	61.24	74.75
KRH41721	Soybean	mitochondrion	72.69	72.55
PGSC0003DMT400023814	Potato	mitochondrion	69.68	70.53
Solyc11g017050.1.1	Tomato	extracellular	70.08	70.08
Os02t0783100-01	Rice	mitochondrion	60.84	62.47
EES07645	Sorghum	mitochondrion	61.04	62.17
Zm00001d052081_P003	Maize	mitochondrion	60.44	61.55
TraesCS6D01G325000.1	Wheat	mitochondrion	59.64	60.49
TraesCS6B01G376100.1	Wheat	mitochondrion	59.24	60.08
GSMUA_Achr10P...	Banana	mitochondrion	43.98	59.03
HORVU6Hr1G082970.1	Barley	cytosol	59.44	56.17
TraesCS6A01G343900.1	Wheat	plastid	59.84	55.19
CDY21931	Canola	golgi, mitochondrion, plastid	42.77	40.26
CDY22091	Canola	golgi, mitochondrion, plastid	42.37	39.74
CDY03022	Canola	extracellular	13.45	23.59
CDY45184	Canola	extracellular, mitochondrion	13.45	23.51
CDY29073	Canola	cytosol, plastid	15.66	23.28
CDX90610	Canola	cytosol	15.46	22.99
CDX92284	Canola	plastid	12.25	22.18
CDX99300	Canola	plastid	12.05	21.82
CDX84297	Canola	plastid	13.25	20.0
CDY29749	Canola	cytosol	15.66	15.92
CDY16267	Canola	cytosol	15.26	15.67
CDY36755	Canola	nucleus, vacuole	15.46	15.62
CDY66686	Canola	extracellular, vacuole	15.26	15.42
CDY13794	Canola	plastid	19.08	15.15
CDY66820	Canola	plastid	18.67	14.95
CDY18308	Canola	plastid	14.66	14.63
CDY14326	Canola	plastid	14.46	14.43

Protein Annotations

Gene3D:1.25.70.10	MapMan:15.6.2.2	MapMan:16.12.2.2.1.5	GO:A0A078FTN3	UniProt:A0A078FTN3	EnsemblPlants:CDY17890
ProteinID:CDY17890	ProteinID:CDY17890.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003690
GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00002233001	InterPro:IPR038538	InterPro:MTERF	InterPro:MTERF_sf	PFAM:PF02536
PANTHER:PTHR13068	PANTHER:PTHR13068:SF8	SMART:SM00733	UniParc:UPI0004EE77AD	SEG:seg	:

Description

BnaC04g03290DBnaC04g03290D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FTN3]

Coordinates

chrLK032079:+:355835..357570

Molecular Weight (calculated)

56696.8 Da

IEP (calculated)

8.074

GRAVY (calculated)

-0.095

Length

498 amino acids

Sequence
(BLAST)

001: MSHLLPRNKK LLSFVTRHYP ILKTLIQNPS PTLLTSHHYA TQSSKFPEYE MPTVTWGVIQ GKKEKLVNRV KICDHLKTLG VITDELETIE LPSTIEVISE
101: RLEFLQKLGL TIDDVNEYPL MLGCSVRKNL IPVLAYLEKI GISRSKLGEF VKNYPQVLHA SVVVELAPVV KFLRGLDVEK QDLGYVLMKY PELLGFKLEG
201: TMSTSVAYLV SIGVSPRDIG PMVTQYPYLL GMRVGTMIKP LVDYLISIGL PKKIVARMLE KRAYVIGYSL EETVKPNVEC LISFGVRREM IPLVIAQYPQ
301: ILGLPVKAKM STQQYFFSLK LKVDPEGFAR VVEKMPQVVS LKQNVIMKPV EFLLGRAFRV EDVARMVVRC PQILCSRVEL MKNAYYFYKT EMGRPMKELV
401: EYPEYFTYGL ESRIKPRYQK LQGKGIRSSL NWFLNCSDQR FEERLEGNFI DADSEGPVFD MGGKLDMPGG GGGEVVSDED DDDESDDDEV LYRRTLTL

Best Arabidopsis Sequence Match ( AT2G44020.1 )
(BLAST)

001: MSYLLRRNKF VALLKRQSLI FPITSTEAKT LINPDPNIPQ FQNPCSIFRI AHYATQSSKF PEYEMPTVTW GVIQGKKEKL VNRVKICDYL KGLGIITDEL
101: ESIELPSTIE VMCERVEFLQ KLGLTIDDIN EYPLMLGCSV RKNLIPVLAY LEKIGISRSK LGEFVKNYPQ VLHASVVVEL APVVKFLRGL DVEKQDLGYV
201: LMKYPELLGF KLEGTMSTSV AYLVSIGVSP RDIGPMVTQY PYLLGMRVGT MIKPLVDYLI SIGLPKKIVA RMLEKRSYIV GYNLEETVKP NVDCLISFGV
301: KKELLPLLIA QYPQILGLPV KAKMSTQQYF FSLKLKIDPE GFARVVEKMP QIVSLKQNVI MKPIEFLLGR AFQVEDIAKM VVRCPQILCS RVELMKNSYY
401: FYKTEMGRPM KELVEYPEYF TYSLESRIKP RYQKLQSKGI RSSLNWFLNC SDQRFEERLQ GNFIDPDTEG PTFDMGGKLE MPGGEIVTDE EEDESDDEVL
501: YRRTLTL

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:O80572]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.