CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90610	Canola	cytosol	98.21	98.21
AT4G38160.3	Thale cress	cytosol, nucleus, peroxisome	78.21	69.31
Solyc11g044360.1.1	Tomato	cytosol	58.51	61.83
PGSC0003DMT400059549	Potato	cytosol	59.4	60.67
GSMUA_AchrUn_...	Banana	cytosol	58.21	58.91
KRH32500	Soybean	cytosol	58.51	58.51
KRH19886	Soybean	cytosol	58.21	58.21
VIT_03s0038g04180.t01	Wine grape	cytosol, plastid	58.51	55.37
Os08t0515800-01	Rice	cytosol	53.13	53.45
GSMUA_Achr7P20690_001	Banana	cytosol	35.22	53.39
EES14251	Sorghum	cytosol	51.34	51.5
Zm00001d049743_P001	Maize	cytosol, mitochondrion, nucleus	51.34	51.5
TraesCS7A01G250000.3	Wheat	cytosol	50.75	51.05
TraesCS7B01G141200.1	Wheat	cytosol	50.75	51.05
TraesCS7D01G248600.1	Wheat	cytosol	46.57	50.16
HORVU7Hr1G051550.3	Barley	mitochondrion	51.04	44.19
CDY03022	Canola	extracellular	19.1	22.54
CDY45184	Canola	extracellular, mitochondrion	19.1	22.46
CDX92284	Canola	plastid	18.21	22.18
CDX99300	Canola	plastid	17.91	21.82
CDY16267	Canola	cytosol	25.37	17.53
CDY29749	Canola	cytosol	25.37	17.35
CDX84297	Canola	plastid	16.12	16.36
CDX79786	Canola	mitochondrion	23.28	15.82
CDY17890	Canola	mitochondrion	23.28	15.66
CDY21931	Canola	golgi, mitochondrion, plastid	22.99	14.56
CDY22091	Canola	golgi, mitochondrion, plastid	22.99	14.5
CDY18308	Canola	plastid	21.19	14.23
CDY14326	Canola	plastid	21.19	14.23
CDY66820	Canola	plastid	25.67	13.83
CDY13794	Canola	plastid	25.67	13.72
CDY66686	Canola	extracellular, vacuole	20.0	13.59
CDY36755	Canola	nucleus, vacuole	20.0	13.59

Protein Annotations

Gene3D:1.25.70.10	MapMan:15.6.2.2	GO:A0A078GWV9	UniProt:A0A078GWV9	EnsemblPlants:CDY29073	ProteinID:CDY29073
ProteinID:CDY29073.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003690	GO:GO:0005488
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
EnsemblPlantsGene:GSBRNA2T00041817001	InterPro:IPR038538	InterPro:MTERF	InterPro:MTERF_sf	PFAM:PF02536	PANTHER:PTHR13068
PANTHER:PTHR13068:SF5	SMART:SM00733	UniParc:UPI0004EE8850	SEG:seg	:	:

Description

BnaC07g32790DBnaC07g32790D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GWV9]

Coordinates

chrLK032229:+:447198..448205

Molecular Weight (calculated)

37650.2 Da

IEP (calculated)

9.472

GRAVY (calculated)

-0.055

Length

335 amino acids

Sequence
(BLAST)

001: MEVVTSTSSS SMSIKRFLKE KGFDEQSIDK MLTKCKQLEN AQTDVASQNW DYLTNTVGIQ DRKLPYIVSR CPKILTLRLH ERLVPMFECL SSLGRNPREV
101: TSAITKFPPI LAHSLEEKLC PLLAFFQALG VPESHLGKIL LFNPRLISYG IETKLAVIVS FLASIGLDKD SGVIGQVLVK HPFLMGYSVE KRLRPTTEFL
201: KSCVGLSDDG VVSVFVNHPQ VVCRDVGKIL RPNYEYLKEC GFGDAQIASM VAGYPPVLIK SVGNSLRPRI RFLVDVMGRG LDEVASYPQF FQHGLKKKVE
301: SRYKVVKKSD VDCSLRDMLD CNNKKFHEKF GVLRV

Best Arabidopsis Sequence Match ( AT4G38160.2 )
(BLAST)

001: MEVTNTSSIM WFFRDKGFDD PSIDKMLRKC KQLEKAQSDV ASENWDYLSN IVGIQERKLP YIVSRCPKIL TLRLDERLIP MVECLSSLGR NPREVASAIT
101: KFPPILSHSV EEKLCPLLAF FQALGVPETQ LGKMILFNPR LISYSIDTKL TVIVSFLASL GLDQDGMIGK VLVKNPFLMG YSVDKRLRPT TEFLKSSVGL
201: SEDGIKSVVM NFPQLLCRDV NKILKPNYDY LKECGFGDSQ IATMVTGYPQ ILIKSVKNSL QPRIRFLVQV MGRGMDEVAS YPEFFHHGLK KKVESRFKLV
301: KKNNIDCSLR EMLDCNTKKF HEKFGFSEVF NCNQNGMYML LDKSVSLLAC DYCSNRQAKE VSA

Arabidopsis Description

pde191Mitochondrial transcription termination factor family protein [Source:UniProtKB/TrEMBL;Acc:F4JSY9]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.