Factsheet for VIT_03s0038g04180.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plastid

Predictor Summary:

plastid 4
cytosol 2
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g044360.1.1	Tomato	cytosol	64.97	72.56
KRH32500	Soybean	cytosol	67.23	71.04
PGSC0003DMT400059549	Potato	cytosol	65.82	71.04
KRH19886	Soybean	cytosol	66.38	70.15
GSMUA_AchrUn_...	Banana	cytosol	60.73	64.95
GSMUA_Achr7P20690_001	Banana	cytosol	37.01	59.28
Bra012812.1-P	Field mustard	cytosol	55.65	58.81
CDX90610	Canola	cytosol	55.65	58.81
Os08t0515800-01	Rice	cytosol	55.08	58.56
CDY29073	Canola	cytosol, plastid	55.37	58.51
Zm00001d049743_P001	Maize	cytosol, mitochondrion, nucleus	55.08	58.38
EES14251	Sorghum	cytosol	55.08	58.38
AT4G38160.3	Thale cress	cytosol, nucleus, peroxisome	61.86	57.94
TraesCS7A01G250000.3	Wheat	cytosol	53.39	56.76
TraesCS7B01G141200.1	Wheat	cytosol	53.11	56.46
TraesCS7D01G248600.1	Wheat	cytosol	47.74	54.34
HORVU7Hr1G051550.3	Barley	mitochondrion	53.39	48.84
VIT_03s0063g02460.t01	Wine grape	plastid	16.1	20.65
VIT_08s0007g02500.t01	Wine grape	plastid	17.23	18.05
VIT_01s0010g03740.t01	Wine grape	plastid	15.82	17.89
VIT_14s0171g00230.t01	Wine grape	plastid	24.29	17.37
VIT_10s0003g04040.t01	Wine grape	plastid	15.54	15.62
VIT_09s0054g01030.t01	Wine grape	plastid	26.27	15.47
VIT_07s0104g00720.t01	Wine grape	mitochondrion	22.03	14.86
VIT_11s0016g02240.t01	Wine grape	mitochondrion	19.49	14.35
VIT_19s0090g01770.t01	Wine grape	plastid	18.93	13.32
VIT_03s0063g02590.t01	Wine grape	cytosol	20.62	12.83
VIT_16s0098g00970.t01	Wine grape	plastid	22.03	3.87

Protein Annotations

Gene3D:1.25.70.10	EntrezGene:100252027	wikigene:100252027	MapMan:15.6.2.2	ProteinID:CBI37711	ProteinID:CBI37711.3
UniProt:D7U4P2	EMBL:FN596508	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003690
GO:GO:0003723	GO:GO:0003727	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0008380
GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009658	GO:GO:0009987	GO:GO:0016043
GO:GO:0019843	GO:GO:0032502	GO:GO:0042255	InterPro:IPR038538	EntrezGene:LOC100252027	wikigene:LOC100252027
InterPro:MTERF	InterPro:MTERF_sf	PFAM:PF02536	PANTHER:PTHR13068	PANTHER:PTHR13068:SF5	SMART:SM00733
UniParc:UPI0001BE4F95	ArrayExpress:VIT_03s0038g04180	EnsemblPlantsGene:VIT_03s0038g04180	EnsemblPlants:VIT_03s0038g04180.t01	unigene:Vvi.22803	RefSeq:XP_002280082
RefSeq:XP_002280082.1	:	:	:	:	:

Description

No Description!

Coordinates

chr3:-:3030695..3032099

Molecular Weight (calculated)

40314.9 Da

IEP (calculated)

9.961

GRAVY (calculated)

-0.095

Length

354 amino acids

Sequence
(BLAST)

001: MASFLTSLKP FPLSSPDFLG KGDMEISSSQ NGSIMWFFRD KGFDDKSIHE MFKKCKRLEG VHRDRASENW AYLRTIGIQD RKIPSIVTKC PKILALGLNE
101: KIVPMVQCLA TLGTKPSEVA SAIAKFPHIL SHSVEEKLCP LLAFFQALGV PEKQLGKVIL VNPRLISYSI ESKLTQIVDF LASLGFTREG MIGKVLQKYP
201: FIMGYSVDKR LRPTSEFLKL IGLTEQDLQK VAMNFPEVFC RDANKILSPN VAYLKRRGFE DGQIAALVSG YPPILIKSIK NSLEPRIRFL VEVMKRDINE
301: VVNYPDFFRC GLKKTLELRQ KLLEQRKIEC SLSEMLDCNQ KKFLLKFNLI ERPT

Best Arabidopsis Sequence Match ( AT4G38160.4 )
(BLAST)

001: MEVTNTSSIM WFFRDKGFDD PSIDKMLRKC KQLEKAQSDV ASENWDYLSN IVGIQERKLP YIVSRCPKIL TLRLDERLIP MVECLSSLGR NPREVASAIT
101: KFPPILSHSV EEKLCPLLAF FQALGVPETQ LGKMILFNPR LISYSIDTKL TVIVSFLASL GLDQDGMIGK VLVKNPFLMG YSVDKRLRPT TEFLKSSVGL
201: SEDGIKSVVM NFPQLLCRDV NKILKPNYDY LKECGFGDSQ IATMVTGYPQ ILIKSVKNSL QPRIRFLVQV MGRGMDEVAS YPEFFHHGLK KKVESRFKLV
301: KKNNIDCSLR EMLDCNTKKF HEKFGFSEVT ASF

Arabidopsis Description

pde191Mitochondrial transcription termination factor family protein [Source:UniProtKB/TrEMBL;Acc:F4JSY9]
SUBAcon: [cytosol,nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.