Factsheet for Solyc11g044360.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400059549	Potato	cytosol	98.11	94.82
KRH19886	Soybean	cytosol	69.4	65.67
KRH32500	Soybean	cytosol	69.4	65.67
VIT_03s0038g04180.t01	Wine grape	cytosol, plastid	72.56	64.97
GSMUA_AchrUn_...	Banana	cytosol	62.78	60.12
Bra012812.1-P	Field mustard	cytosol	62.15	58.81
CDX90610	Canola	cytosol	62.15	58.81
CDY29073	Canola	cytosol, plastid	61.83	58.51
GSMUA_Achr7P20690_001	Banana	cytosol	39.75	57.01
Os08t0515800-01	Rice	cytosol	59.31	56.46
EES14251	Sorghum	cytosol	58.68	55.69
AT4G38160.3	Thale cress	cytosol, nucleus, peroxisome	65.93	55.29
Zm00001d049743_P001	Maize	cytosol, mitochondrion, nucleus	58.04	55.09
TraesCS7A01G250000.3	Wheat	cytosol	56.15	53.45
TraesCS7B01G141200.1	Wheat	cytosol	56.15	53.45
TraesCS7D01G248600.1	Wheat	cytosol	50.79	51.77
HORVU7Hr1G051550.3	Barley	mitochondrion	56.47	46.25
Solyc02g021430.1.1	Tomato	plastid	20.5	21.24
Solyc01g007750.2.1	Tomato	plastid	19.56	19.56
Solyc01g109550.2.1	Tomato	mitochondrion	16.4	17.69
Solyc05g007840.2.1	Tomato	plastid	18.3	17.68
Solyc02g093940.2.1	Tomato	nucleus	25.87	16.94
Solyc11g017050.1.1	Tomato	extracellular	23.66	15.06
Solyc12g015640.1.1	Tomato	plastid	21.14	13.9
Solyc03g124040.2.1	Tomato	golgi, plastid	24.61	13.59
Solyc03g081300.2.1	Tomato	plastid	19.87	12.8
Solyc04g005630.2.1	Tomato	nucleus	21.45	12.59
Solyc01g109630.2.1	Tomato	mitochondrion	23.97	10.78

Protein Annotations

Gene3D:1.25.70.10	MapMan:15.6.2.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003690
GO:GO:0003723	GO:GO:0003727	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0008380
GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009579	GO:GO:0009658	GO:GO:0009987
GO:GO:0016020	GO:GO:0016043	GO:GO:0019843	GO:GO:0032502	GO:GO:0042255	GO:GO:0042651
InterPro:IPR038538	UniProt:K4D8A4	InterPro:MTERF	InterPro:MTERF_sf	PFAM:PF02536	PANTHER:PTHR13068
PANTHER:PTHR13068:SF5	SMART:SM00733	EnsemblPlantsGene:Solyc11g044360.1	EnsemblPlants:Solyc11g044360.1.1	UniParc:UPI000276A2CB	SEG:seg

Description

Transcription termination factor MTERF6, chloroplastic/mitochondrial [Source:Projected from Arabidopsis thaliana (AT4G38160) UniProtKB/Swiss-Prot;Acc:Q9SZL6]

Coordinates

chr11:+:32791401..32792354

Molecular Weight (calculated)

36417.2 Da

IEP (calculated)

9.771

GRAVY (calculated)

-0.096

Length

317 amino acids

Sequence
(BLAST)

001: MWFFKDKGFD DTSINEMFQK CKRLEGVQRE KASENWDYLR SIGIQERKLP SVVRKCPKIL TLGLHEKLFP MVNCLETLGS KPQEVASAIT KFPHILAHSV
101: EEKLCPLLGF FEALGVTEKQ LGKMILINPR IISYSIEHKL SQMVEFLSSL HLAKDGMIGK VLVKHPYIMG YSVDNRLRPT SEFLKSIGLT DMDLQKVLVN
201: YPEVLCRDVN KILKPNLSYL TSRGFGVGQI AAVVTCYPPV LIKSVRNSLE PRIKFLIDVM GRGLDEVVDY PDYFRHSLKR RLQLRQKLLM QKNISCTLSE
301: MLDCNQKKFL FKFGLVQ

Best Arabidopsis Sequence Match ( AT4G38160.4 )
(BLAST)

001: MEVTNTSSIM WFFRDKGFDD PSIDKMLRKC KQLEKAQSDV ASENWDYLSN IVGIQERKLP YIVSRCPKIL TLRLDERLIP MVECLSSLGR NPREVASAIT
101: KFPPILSHSV EEKLCPLLAF FQALGVPETQ LGKMILFNPR LISYSIDTKL TVIVSFLASL GLDQDGMIGK VLVKNPFLMG YSVDKRLRPT TEFLKSSVGL
201: SEDGIKSVVM NFPQLLCRDV NKILKPNYDY LKECGFGDSQ IATMVTGYPQ ILIKSVKNSL QPRIRFLVQV MGRGMDEVAS YPEFFHHGLK KKVESRFKLV
301: KKNNIDCSLR EMLDCNTKKF HEKFGFSEVT ASF

Arabidopsis Description

pde191Mitochondrial transcription termination factor family protein [Source:UniProtKB/TrEMBL;Acc:F4JSY9]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.