Factsheet for Solyc04g005630.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
cytosol 3
mitochondrion 4
nucleus 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400007420	Potato	mitochondrion	86.48	97.9
VIT_07s0104g00720.t01	Wine grape	mitochondrion	69.44	71.43
KRH72610	Soybean	plastid	65.56	68.34
AT4G02990.1	Thale cress	plastid	65.37	65.25
Bra036228.1-P	Field mustard	golgi, mitochondrion, plastid	63.7	64.78
CDY22091	Canola	golgi, mitochondrion, plastid	63.7	64.78
TraesCS1A01G252300.1	Wheat	cytosol	47.41	64.65
CDY21931	Canola	golgi, mitochondrion, plastid	62.96	64.27
TraesCS1B01G265700.1	Wheat	cytosol	51.48	64.2
TraesCS2A01G284000.1	Wheat	cytosol	15.19	60.74
OQU77962	Sorghum	plastid	55.0	59.64
GSMUA_Achr3P24870_001	Banana	cytosol, mitochondrion, plastid	42.96	59.49
HORVU1Hr1G061210.8	Barley	plastid	54.63	59.36
TraesCS1D01G252000.1	Wheat	plastid	54.81	59.2
Zm00001d010340_P001	Maize	plastid	53.7	58.7
Os05t0404000-01	Rice	plastid	55.0	58.46
Solyc11g017050.1.1	Tomato	extracellular	43.7	47.39
Solyc11g044360.1.1	Tomato	cytosol	12.59	21.45
Solyc01g007750.2.1	Tomato	plastid	12.04	20.5
Solyc05g007840.2.1	Tomato	plastid	12.22	20.12
Solyc02g021430.1.1	Tomato	plastid	10.93	19.28
Solyc01g109550.2.1	Tomato	mitochondrion	10.19	18.71
Solyc02g093940.2.1	Tomato	nucleus	13.7	15.29
Solyc03g081300.2.1	Tomato	plastid	13.7	15.04
Solyc01g109630.2.1	Tomato	mitochondrion	19.63	15.04
Solyc12g015640.1.1	Tomato	plastid	13.33	14.94
Solyc03g124040.2.1	Tomato	golgi, plastid	15.74	14.81

Protein Annotations

Gene3D:1.25.70.10	MapMan:15.6.2.2	MapMan:16.12.2.1.1.6	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003690	GO:GO:0003723	GO:GO:0003727	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006355	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008380	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536
GO:GO:0009658	GO:GO:0009790	GO:GO:0009791	GO:GO:0009793	GO:GO:0009987	GO:GO:0016043
GO:GO:0019843	GO:GO:0032502	GO:GO:0042255	GO:GO:0042793	GO:GO:0042794	InterPro:IPR038538
UniProt:K4BNG9	InterPro:MTERF	InterPro:MTERF_sf	PFAM:PF02536	PANTHER:PTHR13068	PANTHER:PTHR13068:SF24
SMART:SM00733	EnsemblPlantsGene:Solyc04g005630.2	EnsemblPlants:Solyc04g005630.2.1	UniParc:UPI00027663F0	SEG:seg	:

Description

No Description!

Coordinates

chr4:-:411094..414033

Molecular Weight (calculated)

61577.3 Da

IEP (calculated)

7.810

GRAVY (calculated)

-0.150

Length

540 amino acids

Sequence
(BLAST)

001: MLKRCLRFHI HTERGFHLQN MKVISYNRII NPSFLLINHE LPSNMFHRPR LISTSAPSIS SFNMRKNDLM MRLPCCFATR AALSSSVKTD TSSGSKKQKS
101: SSFYTHPSLL EMKNEKAANR VRVYEFLRSI GIVPDELDGL ELPVTVEVMR ERVDFLHKLG LTIEDINNYP LVLGCSVKKN MIPVLDYLGK LGVRKSTLTD
201: FLRRYPQVLH ASVVVDLAPV VKYLQGMDIK PNDIPRVLEK YPEVLGFKLE GTMSTSVAYL VGIGVARREI GGLLTRYPEI LGMRVGRVIK PFVEYLEVLG
301: IPRLAVARLI EKHPHILGFG LQERVKPNIQ SLLKFHVRET TLPSVIAQYP EILGIDMEPK LPSQQEFLNS IIESTREDFG RVIEKMPQII SLSKAPVVKH
401: VDFLKECGFS SEQVREMVVG CPQVLALNLD IMKKSFEYFK TTMARPLEDL VAFPAFFTYG LESTIKPRHK KIAEKALKCS LAWLLNCSDE KFDQRMSYDI
501: IDMEEMEVGE SSFDMNTLLE PRNDESASDY DDDYSEDDNV

Best Arabidopsis Sequence Match ( AT4G02990.1 )
(BLAST)

001: MKIRFCNGFT KPGFLLVHFE PPSFFAVRSR SLSDSTYGNL CNHKKRPGTG IGLTVQCAIA NRRFSSRSLD SPRRERSSRS SSSSGRDRDR DKDKGRDSKS
101: LYSRPSLLDM NKEKAANRAK VYEFLRGIGI VPDELDGLEL PVTADVMKER VEFLHKLGLT IEDINNYPLV LGCSVKKNMV PVLDYLGKLG VRKSTFTEFL
201: RRYPQVLHSS VVIDLAPVVK YLQGLDIKPS DVPRVLERYP EVLGFKLEGT MSTSVAYLVG IGVARREIGG ILTRYPEILG MRVARIIKPL VEYLEVLGIP
301: RLAAARLIEK RPHILGFELD DTVKPNVQIL QDFNVRETSL PSIIAQYPEI IGIDLKPKLD TQRKLLCSAI HLNPEDLGSL IERMPQFVSL SESPMLKHID
401: FLTKCGFSID QTREMVIGCP QVLALNLGIM KLSFEYFQKE MKRPLQDLVD FPAFFTYGLE STVKPRHKKI IKKGIKCSLA WMLNCSDEKF EQRMSYDTID
501: IEEVETDPSS FDMNTLMQPE REEESDSEYE EEEDDDDEEF A

Arabidopsis Description

MTERF4Transcription termination factor MTERF4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9ZT96]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.