Factsheet for Solyc03g124040.2.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, plastid

Predictor Summary:

plastid 5
mitochondrion 1
nucleus 1
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plastid
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	mitochondrion
Plant-mPloc:	nucleus, plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400023772	Potato	plastid	95.12	91.46
VIT_09s0054g01030.t01	Wine grape	plastid	55.92	53.41
GSMUA_Achr3P27780_001	Banana	plastid	50.0	47.05
AT1G78930.1	Thale cress	plastid	48.26	46.87
HORVU5Hr1G089290.3	Barley	cytosol	41.64	44.59
KRH09594	Soybean	cytosol	45.64	44.26
OQU89932	Sorghum	plastid	45.12	42.53
Os09t0560100-00	Rice	plasma membrane, plastid	45.3	42.48
Zm00001d027230_P001	Maize	plastid	44.95	42.09
TraesCS5B01G365700.1	Wheat	plastid	42.68	41.88
TraesCS5D01G372800.1	Wheat	plastid	42.68	41.88
TraesCS5A01G363600.1	Wheat	plastid	39.72	39.86
Zm00001d021376_P001	Maize	cytosol	43.73	39.1
HORVU0Hr1G013680.1	Barley	mitochondrion	15.68	38.79
Solyc11g044360.1.1	Tomato	cytosol	13.59	24.61
Solyc05g007840.2.1	Tomato	plastid	12.89	22.56
Solyc01g007750.2.1	Tomato	plastid	11.67	21.14
Solyc02g021430.1.1	Tomato	plastid	10.98	20.59
Solyc01g109550.2.1	Tomato	mitochondrion	10.45	20.41
Solyc02g093940.2.1	Tomato	nucleus	16.2	19.21
Solyc11g017050.1.1	Tomato	extracellular	16.03	18.47
Solyc04g005630.2.1	Tomato	nucleus	14.81	15.74
Solyc12g015640.1.1	Tomato	plastid	12.89	15.35
Solyc03g081300.2.1	Tomato	plastid	13.07	15.24
Solyc01g109630.2.1	Tomato	mitochondrion	18.47	15.04

Protein Annotations

Gene3D:1.25.70.10	MapMan:15.6.2.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003690
GO:GO:0003723	GO:GO:0003727	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0008380
GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009658	GO:GO:0009987	GO:GO:0016043
GO:GO:0019843	GO:GO:0032502	GO:GO:0042255	InterPro:IPR038538	UniProt:K4BNA2	InterPro:MTERF
InterPro:MTERF_sf	PFAM:PF02536	PANTHER:PTHR13068	PANTHER:PTHR13068:SF42	SMART:SM00733	EnsemblPlantsGene:Solyc03g124040.2
EnsemblPlants:Solyc03g124040.2.1	UniParc:UPI0002765FC4	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr3:-:70749855..70758932

Molecular Weight (calculated)

65955.2 Da

IEP (calculated)

9.382

GRAVY (calculated)

-0.090

Length

574 amino acids

Sequence
(BLAST)

001: MRCIQMFSHC LLSNLSFAVP NSKPQLFPIR FSCHCNTFFY CNLIRPEQVC HKLRSYAPLV PLAARSSSSK RTEDTEEVIA EAREAVSYYL QELGVSHKES
101: IEVALNSPNY VSMLIDSVRE LDEFSLWNST DFEKAYDPVP AIPPFKSKVY LMAKQKGDKG MLPFLESIGL TLSSATHLAR YLSSNSLFQT LPTLINKVKY
201: VKKIFFANSD DGGHIARNAR QMMMHLSISI DEDVQQTLSF FQKIQARRGG LHLLGSQDAS FRHLIESFPR LLLLPKESHM KRLMVFLDDI GVVEGCKRQI
301: LLLFPPIIFY DIEKDVRPRL QAILKDGLEA KDFGQMLLKY PWILSRSILQ NYENILIFFD DEKLGDFGIR NQKLGKVIAT SPQLLLQKPQ EFHQIVCFLR
401: DLGLDDDIIG RILGRCPEIF ASSIGRTLKR KLNFLMGIGV SRSHLPRIIR KYPEFFVCDI HRALRPRMMY LMHVGLSKRE VALMVCRFSP LLGYSIDEVL
501: KPKVEFLMNS MGKPISDVVE YPRYFSYSLE KKIKPRYWVL NGRNMECSLK SMLGKNDEEF AAEFGKGKML VPPL

Best Arabidopsis Sequence Match ( AT1G78930.1 )
(BLAST)

001: MELLHTSCNF ETLTLISPPL KSCNFSSSSL FFSPRRVTLF PAYHSGRVTV SASLQHGDSN FSSNSSQTNQ EAQNSIAGFL RRDTGLSEAD SDFISSNCPK
101: YTRMIVEGVR DLEEWNSWKG SGESERVEEG LGFKEKVIYM VKQKGDGGKV AFLESLGLSL SSAMYLAHYV SSESLPILLD KVKYLKEIFF SGSDEKGLVG
201: KYARRMMLYL SIPIDEDVQQ TLSFFEKIEA RRGGLDMLGS VDASFRFLLE SFPRLLLLSE ENDMKPMVEF LESIGIPKYC LGKVLLLYPP IMLGKTEEIK
301: RRVATAMEKV SVVNKDSGKL LLKYPWILSP SIQENYSHIG SFFYSESVLK MDIDHAIRRW PLLLGCSASN MEMMVKEFDK LGVRDKRMGK VIPKMPQLLL
401: CKPQEFLKVV CFLEDLGFQK EIVGQILCRC PEIFGCSIEK TLQKKLIFLT RFGVSTTHFP RIIKKYPEFL IYDADKTVLP RLKYLMEIGI SEREIAFMIR
501: KFSPILGYSI DKVLRPKFEF LVNSMEKPVR EVIEYPRYFS YSLEKRIKPR FRVLKGRNIE CTLQEMLGKN DEEFAADFLG LGELQTHSEI S

Arabidopsis Description

Mitochondrial transcription termination factor family protein [Source:UniProtKB/TrEMBL;Acc:Q0WRV2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.