Factsheet for Solyc01g109630.2.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400001916	Potato	plastid	92.34	94.48
VIT_03s0063g02590.t01	Wine grape	cytosol	52.06	64.5
KRH24469	Soybean	plastid	52.91	59.78
CDY66820	Canola	plastid	51.06	57.88
TraesCS2A01G255200.1	Wheat	cytosol	37.73	57.45
Bra031213.1-P	Field mustard	plastid	51.06	57.42
CDY13794	Canola	plastid	50.5	56.78
AT2G21710.1	Thale cress	plastid	51.49	56.63
KRH29455	Soybean	mitochondrion	44.11	54.75
OQU88410	Sorghum	plastid	45.11	52.82
Zm00001d018756_P001	Maize	plastid	45.11	51.96
Os07t0134700-00	Rice	plastid	44.4	51.48
TraesCS2D01G255600.1	Wheat	mitochondrion	44.11	51.41
TraesCS2B01G267000.1	Wheat	mitochondrion	43.97	51.16
GSMUA_Achr4P23060_001	Banana	mitochondrion	48.65	49.14
Solyc01g007750.2.1	Tomato	plastid	12.06	26.81
Solyc02g021430.1.1	Tomato	plastid	10.64	24.51
Solyc11g044360.1.1	Tomato	cytosol	10.78	23.97
Solyc05g007840.2.1	Tomato	plastid	10.64	22.87
Solyc01g109550.2.1	Tomato	mitochondrion	9.5	22.79
Solyc11g017050.1.1	Tomato	extracellular	13.9	19.68
Solyc04g005630.2.1	Tomato	nucleus	15.04	19.63
Solyc03g124040.2.1	Tomato	golgi, plastid	15.04	18.47
Solyc02g093940.2.1	Tomato	nucleus	12.48	18.18
Solyc12g015640.1.1	Tomato	plastid	11.91	17.43
Solyc03g081300.2.1	Tomato	plastid	10.92	15.65

Protein Annotations

Gene3D:1.25.70.10	MapMan:15.6.2.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003690
GO:GO:0003723	GO:GO:0003727	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0008380
GO:GO:0009058	GO:GO:0009506	GO:GO:0009507	GO:GO:0009536	GO:GO:0009658	GO:GO:0009987
GO:GO:0016043	GO:GO:0019843	GO:GO:0032502	GO:GO:0042255	InterPro:IPR038538	UniProt:K4B3H6
InterPro:MTERF	InterPro:MTERF_sf	PFAM:PF02536	PANTHER:PTHR13068	PANTHER:PTHR13068:SF4	SMART:SM00733
EnsemblPlantsGene:Solyc01g109630.2	EnsemblPlants:Solyc01g109630.2.1	UniParc:UPI00027689DE	:	:	:

Description

No Description!

Coordinates

chr1:-:96521674..96525149

Molecular Weight (calculated)

81984.9 Da

IEP (calculated)

9.152

GRAVY (calculated)

-0.283

Length

705 amino acids

Sequence
(BLAST)

001: MRYCRALSKF KFPPLKMLCE LHHHHFFFTT QSINQQHQTT LPTIVYFSPK RRRSFTIFSA PHPHQQPHLK NQETDPNTTI TSNDEKVVTR KHNSKSSAVL
101: LRYLKQEEYQ ELLPGSDEPE KQDCAVLEED KEKVLEMSLI RKRTPQFPGS LYVQSPTDAD VNTSLPPISS LFHSKKGSGF DDDEMLIKAL EIRRKVTVEI
201: FKEAMRKGRF SITYSTNLVS ELPDFIDYVM IQAASMKQMP EFLGSSFNVR ARYFIDDSGV VPIVRWLKHN ELSYPHIANL ICKSRGDLES IRRLAKWLKS
301: IHVKGRFIGL VMIRAKGNVL GRSLEELDEI VGYLEYKGVK RDWIGYIVGR CPEILSFSME ELESRTNFYF DMGMDAKDFG TMVFDYPKVL GYFSMEEMNQ
401: KVAYLKEFGL SNEDVGRLLA FKPHLMGCGI EEKFKPLVKY FYYLGISKDG MRKILVTRPV LFCVDFETTI VPKVQFLRDI GVQQDAVGNM LVRFPRLLTF
501: SLYKKIRPVV IFLLTKAGVS QRNIGKVIAL GPELLGCSIA NKLDHNVKYF LSLGITLRQL GEMVADFPML LAYNIDILRP KYRYLRRMMV RPLQDLIEFP
601: RFFSYSLDDR IIPRHKIMVE NRVNFKLRYM LASTDDEFKQ KVQVAIERRL RFESGVTYDK QEQTEIDGSI EKLAFDFQTT EILEENTHLC SDDRDLPTQH
701: IQNFV

Best Arabidopsis Sequence Match ( AT2G21710.1 )
(BLAST)

001: MLLHCNVSYY TSTFSFISSS LRRQDNADDS QDTVIRRRHN ARSISLYIRH NRDLKLNKNP NESQETFVPP PPPPRRDLDG ENRSKLLELS LVTRRTPQFP
101: GSIYAQSASD ADIASSLPSL RNFLGSDGDD DGESEREMIV KALEIRRKVT KEIIKESLVR KGRFGITYAT NVTDRLGDFV DHVMIQAAAL KRLPEFSESR
201: FNLRARTVIE DSNFVPLVRW LKHHELSYNR IAKIICMSKG NLDSIRIMIE WLKSIHVKGE FIAVAFLRSG DNILQRNREE LNEIVEYLES NGVRRDWMGY
301: VVGRCPELLS FSMEEVKSRV DFFLKMGMNQ NDFGTMVYDY PKIIGFFSFQ VMEKKINYLK EFGLSTEEVG RLLAYKPHLM GCSIEERWKP LVKYFYYLGI
401: PKEGMKRILV VKPILYCIDL EKTIAPKVRF LQEMGIPNEA IGNMLVKFPS LLTNSLYKKI RPVVIFLLTR AGVTQKDIGK VIAMDPALLG CSIGTKLEPN
501: MRYYISLGIR FYQLGEMIAD FPMLLRYNVD NLRPKYRYLR RTMIRPLQDL IEFPRFFSYS LERRIIPRHT IMVENRVNFK LRYMLACTDE EFERRVRDKV
601: ERRERFEAGL DSEDSQPSDE NISDQEIAFS DEAEEEEDLT E

Arabidopsis Description

MTERF2Transcription termination factor MTERF2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4IHL3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.