Factsheet for GSMUA_Achr4P23060_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G255200.1	Wheat	cytosol	43.27	65.23
OQU88410	Sorghum	plastid	53.01	61.46
TraesCS2D01G255600.1	Wheat	mitochondrion	53.15	61.32
TraesCS2B01G267000.1	Wheat	mitochondrion	53.01	61.06
VIT_03s0063g02590.t01	Wine grape	cytosol	49.57	60.81
Os07t0134700-00	Rice	plastid	52.29	60.03
Zm00001d018756_P001	Maize	plastid	52.44	59.8
KRH24469	Soybean	plastid	47.56	53.21
CDY66820	Canola	plastid	45.99	51.61
Bra031213.1-P	Field mustard	plastid	45.85	51.04
CDY13794	Canola	plastid	45.85	51.04
AT2G21710.1	Thale cress	plastid	45.99	50.08
PGSC0003DMT400001916	Potato	plastid	49.28	49.93
Solyc01g109630.2.1	Tomato	mitochondrion	49.14	48.65
KRH29455	Soybean	mitochondrion	38.83	47.71
GSMUA_Achr6P31220_001	Banana	plastid	8.31	25.78
GSMUA_Achr7P20690_001	Banana	cytosol	7.59	23.98
GSMUA_AchrUn_...	Banana	cytosol	11.32	23.87
GSMUA_Achr5P23270_001	Banana	mitochondrion	10.32	23.3
GSMUA_Achr2P08550_001	Banana	plastid	8.88	22.63
GSMUA_AchrUn_...	Banana	plastid	10.74	22.26
GSMUA_Achr6P02570_001	Banana	plastid	6.45	18.67
GSMUA_Achr3P24870_001	Banana	cytosol, mitochondrion, plastid	10.32	18.46
GSMUA_Achr3P29890_001	Banana	plastid	12.46	17.16
GSMUA_Achr10P...	Banana	mitochondrion	8.74	16.44
GSMUA_Achr3P02690_001	Banana	plastid	12.03	16.22
GSMUA_Achr3P27780_001	Banana	plastid	13.75	15.74

Protein Annotations

Gene3D:1.25.70.10	MapMan:15.6.2.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003690
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009506	GO:GO:0009507
GO:GO:0009536	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr4G23060_001	EnsemblPlants:GSMUA_Achr4P23060_001	EnsemblPlants:GSMUA_Achr4T23060_001	InterPro:IPR038538
UniProt:M0SRB7	InterPro:MTERF	InterPro:MTERF_sf	PFAM:PF02536	PANTHER:PTHR13068	PANTHER:PTHR13068:SF4
SMART:SM00733	UniParc:UPI00029594C1	:	:	:	:

Description

mTERF domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr4G23060_001]

Coordinates

chr4:-:23275303..23279702

Molecular Weight (calculated)

79802.9 Da

IEP (calculated)

10.010

GRAVY (calculated)

-0.164

Length

698 amino acids

Sequence
(BLAST)

001: MFQVFVPIKS WLIRAHFSIY WASPNKSPTK SPYAFRHRKR IRADLSPLPL RREAKGGGKL CEMMLCHGHR HQPTVLLPSH LPPNPNTVLP VCGTLFSRKP
101: LLFSSLRAAL DSKHHLQPLG PDAETDPPRL SRRQNALLLD RSHSHPIDGP PIDDEEREDE LTRKKVVEEY SLATRRVPRF PGSVDFPRAG GLDLPPPDLR
201: RVFDGDDRSL KRALEVRRGV AAETLKDALR AGKMSINYST NLVSRLTEFV DRVVIGAATL KAVPEFAHLS FNARAKSYIQ SSCVVSLVKW LKHNHMTYPQ
301: IAKVICMCPG DLQLVRRITE WLKSIHVKGE SIGVVLVKAG PLFEHSLDEL EEIVNYLENT GVRKDWMGFV VSRCPQVLGL TMEELESRVK FYLDMGMNKK
401: DFGTMVFDYP RALGFFSLEE MANKVQYLKE FGLSTEDVGR LLAFKPQLMG CSIEERWRPL VKYLYYLGVQ RDGMKRILIV KPMVFCIDLE TIIAPKVRFL
501: QDIGVRTEAI GGVLVKFPSF LTYSLYKKIR PVVVFLMTKA GVTQRDIGKV IALDPQLVGC SITKKLDISV KYFLSLGIHL QSLGEMIADF PMLLRYNIDI
601: LRPKYRYLRR VMVRPLQDLI EFPRFFSYSL DERIIPRHKI LVANRVNFKL RYMLSGSDEE FNQRVQFAIE KRKRFESGYA NLDASDDEST HVVPVASS

Best Arabidopsis Sequence Match ( AT2G21710.1 )
(BLAST)

001: MLLHCNVSYY TSTFSFISSS LRRQDNADDS QDTVIRRRHN ARSISLYIRH NRDLKLNKNP NESQETFVPP PPPPRRDLDG ENRSKLLELS LVTRRTPQFP
101: GSIYAQSASD ADIASSLPSL RNFLGSDGDD DGESEREMIV KALEIRRKVT KEIIKESLVR KGRFGITYAT NVTDRLGDFV DHVMIQAAAL KRLPEFSESR
201: FNLRARTVIE DSNFVPLVRW LKHHELSYNR IAKIICMSKG NLDSIRIMIE WLKSIHVKGE FIAVAFLRSG DNILQRNREE LNEIVEYLES NGVRRDWMGY
301: VVGRCPELLS FSMEEVKSRV DFFLKMGMNQ NDFGTMVYDY PKIIGFFSFQ VMEKKINYLK EFGLSTEEVG RLLAYKPHLM GCSIEERWKP LVKYFYYLGI
401: PKEGMKRILV VKPILYCIDL EKTIAPKVRF LQEMGIPNEA IGNMLVKFPS LLTNSLYKKI RPVVIFLLTR AGVTQKDIGK VIAMDPALLG CSIGTKLEPN
501: MRYYISLGIR FYQLGEMIAD FPMLLRYNVD NLRPKYRYLR RTMIRPLQDL IEFPRFFSYS LERRIIPRHT IMVENRVNFK LRYMLACTDE EFERRVRDKV
601: ERRERFEAGL DSEDSQPSDE NISDQEIAFS DEAEEEEDLT E

Arabidopsis Description

MTERF2Transcription termination factor MTERF2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4IHL3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.