Factsheet for Zm00001d018756_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plastid: 22065420
plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU88410	Sorghum	plastid	91.18	92.69
TraesCS2A01G255200.1	Wheat	cytosol	60.46	79.91
Os07t0134700-00	Rice	plastid	77.61	78.12
TraesCS2D01G255600.1	Wheat	mitochondrion	75.49	76.36
TraesCS2B01G267000.1	Wheat	mitochondrion	74.51	75.25
VIT_03s0063g02590.t01	Wine grape	cytosol	51.8	55.71
GSMUA_Achr4P23060_001	Banana	mitochondrion	59.8	52.44
KRH24469	Soybean	plastid	51.31	50.32
CDY66820	Canola	plastid	50.98	50.16
CDY13794	Canola	plastid	50.65	49.44
Bra031213.1-P	Field mustard	plastid	50.33	49.12
AT2G21710.1	Thale cress	plastid	49.67	47.43
PGSC0003DMT400001916	Potato	plastid	52.12	46.3
Solyc01g109630.2.1	Tomato	mitochondrion	51.96	45.11
KRH29455	Soybean	mitochondrion	41.83	45.07
Zm00001d050886_P001	Maize	mitochondrion	11.6	25.45
Zm00001d029242_P001	Maize	plastid	11.93	24.09
Zm00001d047442_P001	Maize	plastid	11.44	23.49
Zm00001d049743_P001	Maize	cytosol, mitochondrion, nucleus	12.58	23.05
Zm00001d011574_P001	Maize	cytosol, extracellular, plastid	5.72	22.88
Zm00001d010340_P001	Maize	plastid	15.52	19.23
Zm00001d052081_P003	Maize	mitochondrion	14.05	17.59
Zm00001d017130_P001	Maize	plastid	13.73	17.28
Zm00001d027230_P001	Maize	plastid	15.52	15.5
Zm00001d021376_P001	Maize	cytosol	15.85	15.11
Zm00001d006700_P003	Maize	mitochondrion, plastid	13.89	14.76

Protein Annotations

Gene3D:1.25.70.10	MapMan:15.6.2.2	UniProt:A0A1D6HRY3	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003690	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009506
GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	InterPro:IPR038538	InterPro:MTERF	InterPro:MTERF_sf
ProteinID:ONM51236.1	PFAM:PF02536	PANTHER:PTHR13068	PANTHER:PTHR13068:SF4	SMART:SM00733	UniParc:UPI0008449677
EnsemblPlantsGene:Zm00001d018756	EnsemblPlants:Zm00001d018756_P001	EnsemblPlants:Zm00001d018756_T001	SEG:seg	:	:

Description

mTERF-domain protein24Transcription termination factor MTERF2 chloroplastic

Coordinates

chr7:+:4290052..4307739

Molecular Weight (calculated)

68699.1 Da

IEP (calculated)

10.045

GRAVY (calculated)

-0.080

Length

612 amino acids

Sequence
(BLAST)

001: MAAALPHSRL HLPLHTPSPT SRRRPCPRSR RRLPSFVAVS RLQNTTAATH PVLPPPAPPP SAALLAAEGA SLAPRREHRF PGSVSSPTST ASASNEAEYA
101: VLLRALQVRR AVAAEVLVAA LGGGKVGGLT YIKNLTGRMG PFVDRVVVEA AAMRRDRPEL AHMSFNARAK AYIQESGLVE LVKWFKHNSM TYPQIAKVVC
201: ACSGDLGKVR KMIKWLRSIY VKGDFLGRVL ANGGSFLNRS FEELEEIIGY LESLGVRRDW IGYVISRCPQ LLSLSMDELE TRVRFYTDLG MDKKDFGTMV
301: YDYPRVLGFL SLEEMNSKVQ YLKEFGLSTE ELGRLLAFKP QLMACSIEER WKPLVKYLYH LNISRDGMKR MLMVQPTIFC LDLETVIAPK VQFLIDIGVR
401: SDAIGNVLAK FPPVLTYSLY KKIRPVVIFL LTKGGVKQDD IGKVIALDPQ LLGCSIAHKL EVSVKYFRSL GIYHFVLGQM IADFPTLLRY NVDILRPKYQ
501: YLRRVMVRPL KDLIEFPRFF SYSLEDRIEP RHRTLVANRI NMKLRYMLTG SDEEFAQRVR EAVERRARFE AGKAAGLETF SCSSETSSDA EATEAAACQN
601: STDVVGVLQK QA

Best Arabidopsis Sequence Match ( AT2G21710.1 )
(BLAST)

001: MLLHCNVSYY TSTFSFISSS LRRQDNADDS QDTVIRRRHN ARSISLYIRH NRDLKLNKNP NESQETFVPP PPPPRRDLDG ENRSKLLELS LVTRRTPQFP
101: GSIYAQSASD ADIASSLPSL RNFLGSDGDD DGESEREMIV KALEIRRKVT KEIIKESLVR KGRFGITYAT NVTDRLGDFV DHVMIQAAAL KRLPEFSESR
201: FNLRARTVIE DSNFVPLVRW LKHHELSYNR IAKIICMSKG NLDSIRIMIE WLKSIHVKGE FIAVAFLRSG DNILQRNREE LNEIVEYLES NGVRRDWMGY
301: VVGRCPELLS FSMEEVKSRV DFFLKMGMNQ NDFGTMVYDY PKIIGFFSFQ VMEKKINYLK EFGLSTEEVG RLLAYKPHLM GCSIEERWKP LVKYFYYLGI
401: PKEGMKRILV VKPILYCIDL EKTIAPKVRF LQEMGIPNEA IGNMLVKFPS LLTNSLYKKI RPVVIFLLTR AGVTQKDIGK VIAMDPALLG CSIGTKLEPN
501: MRYYISLGIR FYQLGEMIAD FPMLLRYNVD NLRPKYRYLR RTMIRPLQDL IEFPRFFSYS LERRIIPRHT IMVENRVNFK LRYMLACTDE EFERRVRDKV
601: ERRERFEAGL DSEDSQPSDE NISDQEIAFS DEAEEEEDLT E

Arabidopsis Description

MTERF2Transcription termination factor MTERF2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4IHL3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.