Subcellular Localization
min:
: max
Winner_takes_all: cytosol, nucleus, mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES14251 | Sorghum | cytosol | 92.81 | 92.81 |
| Os08t0515800-01 | Rice | cytosol | 84.43 | 84.68 |
| TraesCS7B01G141200.1 | Wheat | cytosol | 79.94 | 80.18 |
| TraesCS7A01G250000.3 | Wheat | cytosol | 79.34 | 79.58 |
| TraesCS7D01G248600.1 | Wheat | cytosol | 73.65 | 79.1 |
| HORVU7Hr1G051550.3 | Barley | mitochondrion | 78.74 | 67.96 |
| GSMUA_AchrUn_... | Banana | cytosol | 57.78 | 58.31 |
| Solyc11g044360.1.1 | Tomato | cytosol | 55.09 | 58.04 |
| KRH19886 | Soybean | cytosol | 57.78 | 57.61 |
| KRH32500 | Soybean | cytosol | 56.89 | 56.72 |
| PGSC0003DMT400059549 | Potato | cytosol | 55.69 | 56.71 |
| VIT_03s0038g04180.t01 | Wine grape | cytosol, plastid | 58.38 | 55.08 |
| GSMUA_Achr7P20690_001 | Banana | cytosol | 35.03 | 52.94 |
| Bra012812.1-P | Field mustard | cytosol | 51.5 | 51.34 |
| CDY29073 | Canola | cytosol, plastid | 51.5 | 51.34 |
| CDX90610 | Canola | cytosol | 51.5 | 51.34 |
| AT4G38160.3 | Thale cress | cytosol, nucleus, peroxisome | 53.89 | 47.62 |
| Zm00001d017130_P001 | Maize | plastid | 29.64 | 20.37 |
| Zm00001d010340_P001 | Maize | plastid | 25.45 | 17.21 |
| Zm00001d029242_P001 | Maize | plastid | 15.27 | 16.83 |
| Zm00001d047442_P001 | Maize | plastid | 14.97 | 16.78 |
| Zm00001d052081_P003 | Maize | mitochondrion | 23.65 | 16.16 |
| Zm00001d050886_P001 | Maize | mitochondrion | 13.17 | 15.77 |
| Zm00001d011574_P001 | Maize | cytosol, extracellular, plastid | 7.19 | 15.69 |
| Zm00001d027230_P001 | Maize | plastid | 26.05 | 14.19 |
| Zm00001d021376_P001 | Maize | cytosol | 25.75 | 13.4 |
| Zm00001d018756_P001 | Maize | plastid | 23.05 | 12.58 |
| Zm00001d006700_P003 | Maize | mitochondrion, plastid | 18.26 | 10.59 |
Protein Annotations
| Gene3D:1.25.70.10 | EntrezGene:100286256 | MapMan:15.6.2.2 | ProteinID:AQK51255.1 | UniProt:B6TBV3 | EMBL:BT067054 |
| EMBL:EU962468 | EMBL:EU976460 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003690 |
| GO:GO:0003723 | GO:GO:0003727 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009579 |
| GO:GO:0009658 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016043 | GO:GO:0042651 | InterPro:IPR038538 |
| InterPro:MTERF | InterPro:MTERF_sf | PFAM:PF02536 | PANTHER:PTHR13068 | PANTHER:PTHR13068:SF5 | SMART:SM00733 |
| UniParc:UPI000182C79F | EnsemblPlantsGene:Zm00001d049743 | EnsemblPlants:Zm00001d049743_P001 | EnsemblPlants:Zm00001d049743_T001 | : | : |
Description
mTERF protein domain12Transcription termination factor MTERF6 chloroplastic/mitochondrial
Coordinates
chr4:-:42447381..42459199
Molecular Weight (calculated)
37341.1 Da
IEP (calculated)
10.148
GRAVY (calculated)
-0.068
Length
334 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGSVSNGSG KSLARWLREN GFDDDAVARM SRRCRNLHSL DAGEAPGVWD YLLTGVKMER RKLRHVVAKC PKLLTLSVDG KLAPTVQCLA TLQARPGEVA
101: QAIAKFPQIL FHSVEEKLCP LLAFFQTLGV SERQLAKLLM VNPRLISYSI EAKFSQTVGF LAGLGVDREG MIGKILTKEP YIMGYSVDKR LRPTAEFLKS
201: EVGLQGPDLQ RVVMTFPDIL SRDVDKILRP NLAFLQSRGF SRDQVTALVA GYPPVLIKSI KHCLEPRIKF LVEEMGRDMG EVVGYPQFFR HGLKRSLEYR
301: HKVLKQMNSS CSLSEMLDCN HKKFAMKFGL VAAV
101: QAIAKFPQIL FHSVEEKLCP LLAFFQTLGV SERQLAKLLM VNPRLISYSI EAKFSQTVGF LAGLGVDREG MIGKILTKEP YIMGYSVDKR LRPTAEFLKS
201: EVGLQGPDLQ RVVMTFPDIL SRDVDKILRP NLAFLQSRGF SRDQVTALVA GYPPVLIKSI KHCLEPRIKF LVEEMGRDMG EVVGYPQFFR HGLKRSLEYR
301: HKVLKQMNSS CSLSEMLDCN HKKFAMKFGL VAAV
001: MEVTNTSSIM WFFRDKGFDD PSIDKMLRKC KQLEKAQSDV ASENWDYLSN IVGIQERKLP YIVSRCPKIL TLRLDERLIP MVECLSSLGR NPREVASAIT
101: KFPPILSHSV EEKLCPLLAF FQALGVPETQ LGKMILFNPR LISYSIDTKL TVIVSFLASL GLDQDGMIGK VLVKNPFLMG YSVDKRLRPT TEFLKSSVGL
201: SEDGIKSVVM NFPQLLCRDV NKILKPNYDY LKECGFGDSQ IATMVTGYPQ ILIKSVKNSL QPRIRFLVQV MGRGMDEVAS YPEFFHHGLK KKVESRFKLV
301: KKNNIDCSLR EMLDCNTKKF HEKFGFSEVF NCNQNGMYML LDKSVSLLAC DYCSNRQAKE VSA
101: KFPPILSHSV EEKLCPLLAF FQALGVPETQ LGKMILFNPR LISYSIDTKL TVIVSFLASL GLDQDGMIGK VLVKNPFLMG YSVDKRLRPT TEFLKSSVGL
201: SEDGIKSVVM NFPQLLCRDV NKILKPNYDY LKECGFGDSQ IATMVTGYPQ ILIKSVKNSL QPRIRFLVQV MGRGMDEVAS YPEFFHHGLK KKVESRFKLV
301: KKNNIDCSLR EMLDCNTKKF HEKFGFSEVF NCNQNGMYML LDKSVSLLAC DYCSNRQAKE VSA
Arabidopsis Description
pde191Mitochondrial transcription termination factor family protein [Source:UniProtKB/TrEMBL;Acc:F4JSY9]
SUBAcon: [cytosol,nucleus,plastid]
SUBAcon: [cytosol,nucleus,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.