Factsheet for Os08t0515800-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
vacuole 1
cytosol 2
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES14251	Sorghum	cytosol	88.89	88.62
TraesCS7A01G250000.3	Wheat	cytosol	87.09	87.09
TraesCS7B01G141200.1	Wheat	cytosol	86.49	86.49
TraesCS7D01G248600.1	Wheat	cytosol	80.18	85.85
Zm00001d049743_P001	Maize	cytosol, mitochondrion, nucleus	84.68	84.43
HORVU7Hr1G051550.3	Barley	mitochondrion	84.68	72.87
GSMUA_AchrUn_...	Banana	cytosol	60.36	60.73
Solyc11g044360.1.1	Tomato	cytosol	56.46	59.31
KRH19886	Soybean	cytosol	59.46	59.1
KRH32500	Soybean	cytosol	59.16	58.81
PGSC0003DMT400059549	Potato	cytosol	57.06	57.93
GSMUA_Achr7P20690_001	Banana	cytosol	36.94	55.66
VIT_03s0038g04180.t01	Wine grape	cytosol, plastid	58.56	55.08
Bra012812.1-P	Field mustard	cytosol	53.45	53.13
CDY29073	Canola	cytosol, plastid	53.45	53.13
CDX90610	Canola	cytosol	53.45	53.13
AT4G38160.3	Thale cress	cytosol, nucleus, peroxisome	54.95	48.41
Os03t0785200-01	Rice	plastid	16.22	17.42
Os03t0360600-00	Rice	cytosol, mitochondrion	15.02	16.61
Os05t0404000-01	Rice	plastid	24.32	15.94
Os02t0783100-01	Rice	mitochondrion	21.92	15.05
Os02t0577501-00	Rice	plastid	12.61	14.89
Os09t0560100-00	Rice	plasma membrane, plastid	23.42	12.75
Os07t0583200-01	Rice	endoplasmic reticulum, plastid	18.92	12.52
Os07t0134700-00	Rice	plastid	20.72	11.35

Protein Annotations

Gene3D:1.25.70.10	MapMan:15.6.2.2	EntrezGene:4346032	EMBL:AK061787	ProteinID:BAC56785.1	ProteinID:BAF24149.1
ProteinID:BAT06233.1	ProteinID:EAZ43331.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003690
GO:GO:0003723	GO:GO:0003727	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0008380
GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009579	GO:GO:0009658	GO:GO:0009987
GO:GO:0016020	GO:GO:0016043	GO:GO:0019843	GO:GO:0032502	GO:GO:0042255	GO:GO:0042651
InterPro:IPR038538	InterPro:MTERF	InterPro:MTERF_sf	EnsemblPlantsGene:Os08g0515800	EnsemblPlants:Os08t0515800-01	PFAM:PF02536
PANTHER:PTHR13068	PANTHER:PTHR13068:SF5	UniProt:Q84Z62	SMART:SM00733	UniParc:UPI000000463D	RefSeq:XP_015650859.1

Description

Mitochodrial transcription termination factor-related family protein. (Os08t0515800-01)

Coordinates

chr8:-:25589036..25590554

Molecular Weight (calculated)

37418.4 Da

IEP (calculated)

9.809

GRAVY (calculated)

-0.034

Length

333 amino acids

Sequence
(BLAST)

001: MASGGSSNAG SLTQWLREKG FDEEAIGRMS RRCKNLHGLD AGEASGVWDY LLNVVKIERR KLRYVVTKCP KVLTLSVDDK LVPTVQCLTT LQAKPGEVAQ
101: AIVKFPQILF HSVEEKLCPL LAFFQTLGIS EKQLAKLLMV NPRLISYSIE AKFSQTVNFL VGLGIDKEGM IGKIMAKEPY IMGYSVDKRL RPTAEFLKSA
201: VGLEGSNLQR VIMSFPDILS RDVDKILRPN LAFLQSCGFS KDQVMALVAG YPPVLIKSVK HCLEPRMKFL VEEMGRDMGE VVDYPQFFRH GLKRSLEYRH
301: KVLKQMNSRC SLSEMLDCNQ KKFAMKFGLL AAV

Best Arabidopsis Sequence Match ( AT4G38160.4 )
(BLAST)

001: MEVTNTSSIM WFFRDKGFDD PSIDKMLRKC KQLEKAQSDV ASENWDYLSN IVGIQERKLP YIVSRCPKIL TLRLDERLIP MVECLSSLGR NPREVASAIT
101: KFPPILSHSV EEKLCPLLAF FQALGVPETQ LGKMILFNPR LISYSIDTKL TVIVSFLASL GLDQDGMIGK VLVKNPFLMG YSVDKRLRPT TEFLKSSVGL
201: SEDGIKSVVM NFPQLLCRDV NKILKPNYDY LKECGFGDSQ IATMVTGYPQ ILIKSVKNSL QPRIRFLVQV MGRGMDEVAS YPEFFHHGLK KKVESRFKLV
301: KKNNIDCSLR EMLDCNTKKF HEKFGFSEVT ASF

Arabidopsis Description

pde191Mitochondrial transcription termination factor family protein [Source:UniProtKB/TrEMBL;Acc:F4JSY9]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.