Factsheet for Os05t0404000-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 2
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G265700.1	Wheat	cytosol	74.41	87.3
TraesCS1A01G252300.1	Wheat	cytosol	67.91	87.12
TraesCS1D01G252000.1	Wheat	plastid	84.45	85.8
OQU77962	Sorghum	plastid	83.66	85.34
HORVU1Hr1G061210.8	Barley	plastid	83.27	85.11
Zm00001d010340_P001	Maize	plastid	82.28	84.62
PGSC0003DMT400007420	Potato	mitochondrion	56.89	60.59
VIT_07s0104g00720.t01	Wine grape	mitochondrion	60.24	58.29
KRH72610	Soybean	plastid	57.09	55.98
GSMUA_Achr3P24870_001	Banana	cytosol, mitochondrion, plastid	42.32	55.13
Solyc04g005630.2.1	Tomato	nucleus	58.46	55.0
AT4G02990.1	Thale cress	plastid	57.87	54.34
CDY21931	Canola	golgi, mitochondrion, plastid	55.71	53.5
Bra036228.1-P	Field mustard	golgi, mitochondrion, plastid	55.91	53.48
CDY22091	Canola	golgi, mitochondrion, plastid	55.91	53.48
Os02t0783100-01	Rice	mitochondrion	43.11	45.15
Os08t0515800-01	Rice	cytosol	15.94	24.32
Os03t0360600-00	Rice	cytosol, mitochondrion	14.17	23.92
Os03t0785200-01	Rice	plastid	13.39	21.94
Os02t0577501-00	Rice	plastid	11.42	20.57
Os07t0583200-01	Rice	endoplasmic reticulum, plastid	16.14	16.3
Os09t0560100-00	Rice	plasma membrane, plastid	18.9	15.69
Os07t0134700-00	Rice	plastid	18.7	15.62

Protein Annotations

Gene3D:1.25.70.10	MapMan:15.6.2.2	MapMan:16.12.2.1.1.6	EntrezGene:4338743	ProteinID:AAT85216.1	EMBL:AK102821
ProteinID:BAF17414.1	ProteinID:BAS93934.1	ProteinID:EEE63676.1	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003690	GO:GO:0003723	GO:GO:0003727	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006351	GO:GO:0006353
GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008380	GO:GO:0009058
GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009658	GO:GO:0009790	GO:GO:0009791
GO:GO:0009793	GO:GO:0009987	GO:GO:0016043	GO:GO:0019843	GO:GO:0032502	GO:GO:0042255
GO:GO:0042793	GO:GO:0042794	InterPro:IPR038538	InterPro:MTERF	InterPro:MTERF_sf	EnsemblPlantsGene:Os05g0404000
EnsemblPlants:Os05t0404000-01	PFAM:PF02536	PANTHER:PTHR13068	PANTHER:PTHR13068:SF24	UniProt:Q6AUK6	SMART:SM00733
UniParc:UPI0000401B25	RefSeq:XP_015637874.1	SEG:seg	:	:	:

Description

Mitochodrial transcription termination factor-related family protein. (Os05t0404000-01)

Coordinates

chr5:+:19678186..19680083

Molecular Weight (calculated)

56689.7 Da

IEP (calculated)

5.053

GRAVY (calculated)

-0.096

Length

508 amino acids

Sequence
(BLAST)

001: MMKSLFLFSA HPKPPPLPPS PHLRKLLRLT ASASTSASSP PRAGCSRGPA HARPRPSPRP SPSSSLYARP SLLDMERGRA ARRADVDAFL ASLGVDPGEL
101: AGLELPATVD VMRERVEFLH SLDLSNEDLA AYPLALGCSV RKNMVPVLDY LGKLGVRQDA LPDLLRRYPQ VLHASVVVDL APVVKYLQGM DVRPHDVPRV
201: LERYPELLGF KLEGTMSTSI AYLVGIGVAR RQVGSVITRF PEVLGMRVGK IIKPFVEHLE GIGLQRLAIA RIIEKKPYVL GFGLEDKVKP NIEALLEFGV
301: RKEALAFIVA QYPDILGIEL RDKLATQQSL FESSILVSSE DFGRVIERMP QAISLGRTAV LKHVNFLTSC GFLLSQVSKM VVACPQLLAL NMDIMKMSFE
401: YFQNEMERDL EELVEFPAFF TYGLESTVRP RHEMVAKKGF TCSLAWLLNC SDAKFDERMK YDTIGIEEME VDNSFDTNTL SERVEDEVED EDLDEDSDYD
501: STDDEFIE

Best Arabidopsis Sequence Match ( AT4G02990.1 )
(BLAST)

001: MKIRFCNGFT KPGFLLVHFE PPSFFAVRSR SLSDSTYGNL CNHKKRPGTG IGLTVQCAIA NRRFSSRSLD SPRRERSSRS SSSSGRDRDR DKDKGRDSKS
101: LYSRPSLLDM NKEKAANRAK VYEFLRGIGI VPDELDGLEL PVTADVMKER VEFLHKLGLT IEDINNYPLV LGCSVKKNMV PVLDYLGKLG VRKSTFTEFL
201: RRYPQVLHSS VVIDLAPVVK YLQGLDIKPS DVPRVLERYP EVLGFKLEGT MSTSVAYLVG IGVARREIGG ILTRYPEILG MRVARIIKPL VEYLEVLGIP
301: RLAAARLIEK RPHILGFELD DTVKPNVQIL QDFNVRETSL PSIIAQYPEI IGIDLKPKLD TQRKLLCSAI HLNPEDLGSL IERMPQFVSL SESPMLKHID
401: FLTKCGFSID QTREMVIGCP QVLALNLGIM KLSFEYFQKE MKRPLQDLVD FPAFFTYGLE STVKPRHKKI IKKGIKCSLA WMLNCSDEKF EQRMSYDTID
501: IEEVETDPSS FDMNTLMQPE REEESDSEYE EEEDDDDEEF A

Arabidopsis Description

MTERF4Transcription termination factor MTERF4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9ZT96]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.