Factsheet for Zm00001d010340_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 22065420
plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU77962	Sorghum	plastid	94.33	93.57
TraesCS1B01G265700.1	Wheat	cytosol	73.89	84.3
TraesCS1A01G252300.1	Wheat	cytosol	67.21	83.84
TraesCS1D01G252000.1	Wheat	plastid	83.4	82.4
HORVU1Hr1G061210.8	Barley	plastid	82.79	82.29
Os05t0404000-01	Rice	plastid	84.62	82.28
PGSC0003DMT400007420	Potato	mitochondrion	57.89	59.96
KRH72610	Soybean	plastid	58.5	55.79
VIT_07s0104g00720.t01	Wine grape	mitochondrion	58.3	54.86
GSMUA_Achr3P24870_001	Banana	cytosol, mitochondrion, plastid	42.71	54.1
Solyc04g005630.2.1	Tomato	nucleus	58.7	53.7
CDY21931	Canola	golgi, mitochondrion, plastid	56.28	52.55
Bra036228.1-P	Field mustard	golgi, mitochondrion, plastid	55.67	51.79
CDY22091	Canola	golgi, mitochondrion, plastid	55.67	51.79
AT4G02990.1	Thale cress	plastid	56.68	51.76
Zm00001d052081_P003	Maize	mitochondrion	43.52	43.97
Zm00001d049743_P001	Maize	cytosol, mitochondrion, nucleus	17.21	25.45
Zm00001d047442_P001	Maize	plastid	13.36	22.15
Zm00001d011574_P001	Maize	cytosol, extracellular, plastid	6.68	21.57
Zm00001d029242_P001	Maize	plastid	12.55	20.46
Zm00001d050886_P001	Maize	mitochondrion	9.92	17.56
Zm00001d017130_P001	Maize	plastid	17.21	17.49
Zm00001d018756_P001	Maize	plastid	19.23	15.52
Zm00001d027230_P001	Maize	plastid	18.62	15.01
Zm00001d021376_P001	Maize	cytosol	18.83	14.49
Zm00001d006700_P003	Maize	mitochondrion, plastid	15.79	13.54

Protein Annotations

Gene3D:1.25.70.10	MapMan:15.6.2.2	MapMan:16.12.2.1.1.6	ProteinID:AQK93897.1	UniProt:B6TGN4	EMBL:EU964149
GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003690	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006351
GO:GO:0006353	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008380
GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009790	GO:GO:0009791
GO:GO:0009793	GO:GO:0009987	GO:GO:0032502	GO:GO:0042254	GO:GO:0042793	GO:GO:0042794
InterPro:IPR038538	InterPro:MTERF	InterPro:MTERF_sf	PFAM:PF02536	PANTHER:PTHR13068	PANTHER:PTHR13068:SF24
SMART:SM00733	UniParc:UPI000182E3F0	EnsemblPlantsGene:Zm00001d010340	EnsemblPlants:Zm00001d010340_P001	EnsemblPlants:Zm00001d010340_T001	SEG:seg

Description

mTERF-domain protein4Putative mitochondrial transcription termination factor family protein%3B mTERF family protein

Coordinates

chr8:-:110435824..110437308

Molecular Weight (calculated)

55234.3 Da

IEP (calculated)

5.648

GRAVY (calculated)

-0.078

Length

494 amino acids

Sequence
(BLAST)

001: MMKSLLFSAH PTSLLLPAPR LRRLLRLRAA SSASASAPPR ADRRSPGTPS RRPSSSLYAR PSLLDMERDR ATRRADVDAF LTSLGVDPGE LAGLELPVTV
101: DVMRERAEFL GSLGLTQEDL AAYPLALGCS VRKNMVPVLD YLGKLGVRRD ALPDLLRRYP QVLHASVVVD LAPVVKYLQG MDVRPTDVPR VLERYPELLG
201: FKLEGTMSTS VAYLVGIGVG RRQVGSVITR FPEVLGMRVG KIIKPFVEHL EGIGLQRLAI ARIIEKKPYV LGFGLQEKVK PNIEALVDIG VRKEALASIV
301: MQYPDVLGLE LRDKLVAQQS LFESSILVSR EDFGRVLERM PQAISLGRAA VLKHVNFLTA CGFMLSQVSK MVVACPQLLA LNIDIMRMNF EYFKNEMERD
401: LEELVEFPAF FTYGIESTVR PRHEMVSRKG LTCSLAWLLN CSDAKFDERM KYDTIGVEEM EREDSSDMNA SVDEVESEEY EDSDYGDSDD EFVR

Best Arabidopsis Sequence Match ( AT4G02990.1 )
(BLAST)

001: MKIRFCNGFT KPGFLLVHFE PPSFFAVRSR SLSDSTYGNL CNHKKRPGTG IGLTVQCAIA NRRFSSRSLD SPRRERSSRS SSSSGRDRDR DKDKGRDSKS
101: LYSRPSLLDM NKEKAANRAK VYEFLRGIGI VPDELDGLEL PVTADVMKER VEFLHKLGLT IEDINNYPLV LGCSVKKNMV PVLDYLGKLG VRKSTFTEFL
201: RRYPQVLHSS VVIDLAPVVK YLQGLDIKPS DVPRVLERYP EVLGFKLEGT MSTSVAYLVG IGVARREIGG ILTRYPEILG MRVARIIKPL VEYLEVLGIP
301: RLAAARLIEK RPHILGFELD DTVKPNVQIL QDFNVRETSL PSIIAQYPEI IGIDLKPKLD TQRKLLCSAI HLNPEDLGSL IERMPQFVSL SESPMLKHID
401: FLTKCGFSID QTREMVIGCP QVLALNLGIM KLSFEYFQKE MKRPLQDLVD FPAFFTYGLE STVKPRHKKI IKKGIKCSLA WMLNCSDEKF EQRMSYDTID
501: IEEVETDPSS FDMNTLMQPE REEESDSEYE EEEDDDDEEF A

Arabidopsis Description

MTERF4Transcription termination factor MTERF4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9ZT96]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.