CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, golgi, plastid

Predictor Summary:

plastid 4
cytosol 1
mitochondrion 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, mitochondrion, plastid
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	cytosol
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra036228.1-P	Field mustard	golgi, mitochondrion, plastid	100.0	100.0
CDY21931	Canola	golgi, mitochondrion, plastid	95.48	95.84
AT4G02990.1	Thale cress	plastid	81.17	79.67
PGSC0003DMT400007420	Potato	mitochondrion	63.28	70.44
VIT_07s0104g00720.t01	Wine grape	mitochondrion	64.97	65.71
KRH72610	Soybean	plastid	63.84	65.44
Solyc04g005630.2.1	Tomato	nucleus	64.78	63.7
TraesCS2A01G284000.1	Wheat	cytosol	15.63	61.48
TraesCS1A01G252300.1	Wheat	cytosol	44.82	60.1
TraesCS1B01G265700.1	Wheat	cytosol	48.78	59.82
GSMUA_Achr3P24870_001	Banana	cytosol, mitochondrion, plastid	41.81	56.92
OQU77962	Sorghum	plastid	53.3	56.83
Os05t0404000-01	Rice	plastid	53.48	55.91
TraesCS1D01G252000.1	Wheat	plastid	52.54	55.8
Zm00001d010340_P001	Maize	plastid	51.79	55.67
HORVU1Hr1G061210.8	Barley	plastid	51.79	55.33
CDX79786	Canola	mitochondrion	40.68	43.81
CDY17890	Canola	mitochondrion	39.74	42.37
CDX90610	Canola	cytosol	14.69	23.28
CDY29073	Canola	cytosol, plastid	14.5	22.99
CDX99300	Canola	plastid	11.86	22.91
CDX92284	Canola	plastid	11.68	22.55
CDX84297	Canola	plastid	12.99	20.91
CDY03022	Canola	extracellular	10.73	20.07
CDY45184	Canola	extracellular, mitochondrion	10.73	20.0
CDY66686	Canola	extracellular, vacuole	16.2	17.44
CDY36755	Canola	nucleus, vacuole	16.01	17.24
CDY13794	Canola	plastid	19.02	16.11
CDY66820	Canola	plastid	18.27	15.59
CDY29749	Canola	cytosol	13.94	15.1
CDY16267	Canola	cytosol	13.56	14.85
CDY14326	Canola	plastid	12.99	13.83
CDY18308	Canola	plastid	12.99	13.83

Protein Annotations

Gene3D:1.25.70.10	MapMan:15.6.2.2	MapMan:16.12.2.1.1.6	GO:A0A078G9M7	UniProt:A0A078G9M7	EnsemblPlants:CDY22091
ProteinID:CDY22091	ProteinID:CDY22091.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003690	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00018477001	InterPro:IPR038538	InterPro:MTERF	InterPro:MTERF_sf
PFAM:PF02536	PANTHER:PTHR13068	PANTHER:PTHR13068:SF24	SMART:SM00733	UniParc:UPI0002541EA9	SEG:seg

Description

BnaA09g01200DBnaA09g01200D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G9M7]

Coordinates

chrLK032127:+:531179..533250

Molecular Weight (calculated)

60593.9 Da

IEP (calculated)

7.239

GRAVY (calculated)

-0.314

Length

531 amino acids

Sequence
(BLAST)

001: MKLRLCSGLT KPGLLLVHFM PPSFHSLSYG HGGLGLNVRC AIASRRLSSN PPKRERLRSS SSRRDKDKAK RDSPSSQSLY ARPSLLEMNK EKAANRARVY
101: HFLRGVGIVP DELDGLELPV TSEVMKERVD FLHKLGLTIE DINNYPLVLG CSVKKNMVPV LDYLGKLGVR KSTFTEFLRR YPQVLHASVV IDLAPVVKYL
201: QGLDIKPVDV PRVLERYPEV LGFKLEGTMS TSVAYLIGIG VARREIGGIL TRYPEVLGMR VARVIKPLVE YLEGVGIPKL AMSRLIEKRP HILGFELEDE
301: VKRNVQTLRE FNVREVYLPS VIAQYPEIMG MDLKPKLEAQ RKLLSSVIDL NPEDLGGLIE RMPQFVSLSE APMVKHVGFL KECGFSVEQT REMVIGCPQV
401: LALNIGIMKL SFEYFRKEMR RPLQDLVDFP AFFTYGLEST VKPRHKRIVK KGIKCSLAWM LNCSEEKFEQ RMSYDTIDIE EVESGPASFD MSTLMQPERE
501: EEEEESEYEE EEDDDEDEEF ETKRSNGRFR Q

Best Arabidopsis Sequence Match ( AT4G02990.1 )
(BLAST)

001: MKIRFCNGFT KPGFLLVHFE PPSFFAVRSR SLSDSTYGNL CNHKKRPGTG IGLTVQCAIA NRRFSSRSLD SPRRERSSRS SSSSGRDRDR DKDKGRDSKS
101: LYSRPSLLDM NKEKAANRAK VYEFLRGIGI VPDELDGLEL PVTADVMKER VEFLHKLGLT IEDINNYPLV LGCSVKKNMV PVLDYLGKLG VRKSTFTEFL
201: RRYPQVLHSS VVIDLAPVVK YLQGLDIKPS DVPRVLERYP EVLGFKLEGT MSTSVAYLVG IGVARREIGG ILTRYPEILG MRVARIIKPL VEYLEVLGIP
301: RLAAARLIEK RPHILGFELD DTVKPNVQIL QDFNVRETSL PSIIAQYPEI IGIDLKPKLD TQRKLLCSAI HLNPEDLGSL IERMPQFVSL SESPMLKHID
401: FLTKCGFSID QTREMVIGCP QVLALNLGIM KLSFEYFQKE MKRPLQDLVD FPAFFTYGLE STVKPRHKKI IKKGIKCSLA WMLNCSDEKF EQRMSYDTID
501: IEEVETDPSS FDMNTLMQPE REEESDSEYE EEEDDDDEEF A

Arabidopsis Description

MTERF4Transcription termination factor MTERF4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9ZT96]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.