CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY13794	Canola	plastid	96.46	95.69
Bra031213.1-P	Field mustard	plastid	95.98	95.22
AT2G21710.1	Thale cress	plastid	89.39	86.74
VIT_03s0063g02590.t01	Wine grape	cytosol	58.2	63.62
KRH24469	Soybean	plastid	57.72	57.53
TraesCS2A01G255200.1	Wheat	cytosol	41.96	56.37
KRH29455	Soybean	mitochondrion	47.75	52.29
PGSC0003DMT400001916	Potato	plastid	57.88	52.25
Os07t0134700-00	Rice	plastid	50.96	52.14
OQU88410	Sorghum	plastid	50.0	51.66
Solyc01g109630.2.1	Tomato	mitochondrion	57.88	51.06
TraesCS2B01G267000.1	Wheat	mitochondrion	49.68	50.99
Zm00001d018756_P001	Maize	plastid	50.16	50.98
TraesCS2D01G255600.1	Wheat	mitochondrion	49.52	50.91
GSMUA_Achr4P23060_001	Banana	mitochondrion	51.61	45.99
CDX90610	Canola	cytosol	13.99	25.97
CDY29073	Canola	cytosol, plastid	13.83	25.67
CDX92284	Canola	plastid	11.09	25.09
CDY45184	Canola	extracellular, mitochondrion	11.41	24.91
CDX99300	Canola	plastid	10.93	24.73
CDY03022	Canola	extracellular	11.25	24.65
CDX84297	Canola	plastid	12.54	23.64
CDX79786	Canola	mitochondrion	15.11	19.07
CDY16267	Canola	cytosol	14.79	18.97
CDY29749	Canola	cytosol	14.79	18.78
CDY21931	Canola	golgi, mitochondrion, plastid	15.92	18.71
CDY17890	Canola	mitochondrion	14.95	18.67
CDY22091	Canola	golgi, mitochondrion, plastid	15.59	18.27
CDY66686	Canola	extracellular, vacuole	12.7	16.02
CDY36755	Canola	nucleus, vacuole	12.54	15.82
CDY14326	Canola	plastid	12.54	15.63
CDY18308	Canola	plastid	12.54	15.63

Protein Annotations

Gene3D:1.25.70.10	MapMan:15.6.2.2	GO:A0A078JK74	UniProt:A0A078JK74	EnsemblPlants:CDY66820	ProteinID:CDY66820
ProteinID:CDY66820.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003690	GO:GO:0005488
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
EnsemblPlantsGene:GSBRNA2T00056636001	InterPro:IPR038538	InterPro:MTERF	InterPro:MTERF_sf	PFAM:PF02536	PANTHER:PTHR13068
PANTHER:PTHR13068:SF4	SMART:SM00733	UniParc:UPI0004EE7841	SEG:seg	:	:

Description

BnaC08g49230DBnaC08g49230D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JK74]

Coordinates

chrLK035491:+:3576..6441

Molecular Weight (calculated)

72239.7 Da

IEP (calculated)

8.427

GRAVY (calculated)

-0.317

Length

622 amino acids

Sequence
(BLAST)

001: MLLHCNASCC TSTFSLVSSS LRRQDHPDES QDTVIRRRHN ARSLSLFTRH NQNLKQNKNL NESQETFVPP RHDDDDRSKL LELSLVTRRT PQFPGSIYAQ
101: SASDPDIASS LPSLQGESER EMIAKALEIR RKVTKEIIKE SLVRKGKFGI TYATNVTDRL GEFVDHVMIE AAALKRLPEY SETRFNIRAR TVIEDSNFVA
201: LVRWLKYHEF SYNRIGKIIC MSKGNLDSIR IMIEWLKTIH VKGEFIGVAF LRSGDNILQR SLEELDEIVE YLESNGVRRD WMGYVVGRCP ELLSFSMEEV
301: KTRVDFFMKM GMNQKDFGTM VFDYPKILGF FSFEEMEKKI SYLKEFGLST EEVGRLLAFK PHLMGCSIEE RWKPLVKYFY YLGISKEGMK RILVVKPILY
401: CIDLEKTIAP KVRFFQDMGI PNEAIGNMLV KFPSLLTNSL YKKIRPVVIF LLTRAGVSQK DIGKVIAMDP ALLGCSIGTK LEPNMRYYVS LGIRIHQLGE
501: MIADFPMLLR YNVDILRPKY SYLRRTMIRP LQDLIEFPRF FSYSLERRII PRHTTMVENR VNFKLRYMLA CTDGEFERRV RDKVERRERF EAGLDSEDSQ
601: LLDDTISDEE VASSDSPEVE ED

Best Arabidopsis Sequence Match ( AT2G21710.1 )
(BLAST)

001: MLLHCNVSYY TSTFSFISSS LRRQDNADDS QDTVIRRRHN ARSISLYIRH NRDLKLNKNP NESQETFVPP PPPPRRDLDG ENRSKLLELS LVTRRTPQFP
101: GSIYAQSASD ADIASSLPSL RNFLGSDGDD DGESEREMIV KALEIRRKVT KEIIKESLVR KGRFGITYAT NVTDRLGDFV DHVMIQAAAL KRLPEFSESR
201: FNLRARTVIE DSNFVPLVRW LKHHELSYNR IAKIICMSKG NLDSIRIMIE WLKSIHVKGE FIAVAFLRSG DNILQRNREE LNEIVEYLES NGVRRDWMGY
301: VVGRCPELLS FSMEEVKSRV DFFLKMGMNQ NDFGTMVYDY PKIIGFFSFQ VMEKKINYLK EFGLSTEEVG RLLAYKPHLM GCSIEERWKP LVKYFYYLGI
401: PKEGMKRILV VKPILYCIDL EKTIAPKVRF LQEMGIPNEA IGNMLVKFPS LLTNSLYKKI RPVVIFLLTR AGVTQKDIGK VIAMDPALLG CSIGTKLEPN
501: MRYYISLGIR FYQLGEMIAD FPMLLRYNVD NLRPKYRYLR RTMIRPLQDL IEFPRFFSYS LERRIIPRHT IMVENRVNFK LRYMLACTDE EFERRVRDKV
601: ERRERFEAGL DSEDSQPSDE NISDQEIAFS DEAEEEEDLT E

Arabidopsis Description

MTERF2Transcription termination factor MTERF2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4IHL3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.