CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92284	Canola	plastid	95.64	95.64
AT3G18870.1	Thale cress	plastid	86.91	87.23
KRH40190	Soybean	cytosol	25.82	64.55
VIT_03s0063g02460.t01	Wine grape	plastid	56.73	56.52
KRH01028	Soybean	plastid	53.09	53.28
GSMUA_Achr2P08550_001	Banana	plastid	50.91	51.09
PGSC0003DMT400001905	Potato	plastid	50.18	49.11
Solyc01g109550.2.1	Tomato	mitochondrion	52.36	48.98
CDY03022	Canola	extracellular	33.82	32.75
CDY45184	Canola	extracellular, mitochondrion	33.82	32.63
CDX84297	Canola	plastid	34.91	29.09
CDX90610	Canola	cytosol	22.18	18.21
CDY29073	Canola	cytosol, plastid	21.82	17.91
CDY29749	Canola	cytosol	26.55	14.9
CDY16267	Canola	cytosol	25.82	14.64
CDY36755	Canola	nucleus, vacuole	25.09	14.0
CDY66686	Canola	extracellular, vacuole	25.09	14.0
CDX79786	Canola	mitochondrion	22.55	12.58
CDY14326	Canola	plastid	22.55	12.42
CDY18308	Canola	plastid	22.18	12.22
CDY17890	Canola	mitochondrion	21.82	12.05
CDY22091	Canola	golgi, mitochondrion, plastid	22.91	11.86
CDY21931	Canola	golgi, mitochondrion, plastid	22.18	11.53
CDY13794	Canola	plastid	25.09	11.0
CDY66820	Canola	plastid	24.73	10.93

Protein Annotations

Gene3D:1.25.70.10	MapMan:15.6.2.2	GO:A0A078EB23	EnsemblPlants:CDX99300	ProteinID:CDX99300	ProteinID:CDX99300.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003690	GO:GO:0005488	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00107572001
InterPro:IPR038538	InterPro:MTERF	InterPro:MTERF_sf	PFAM:PF02536	PANTHER:PTHR13068	PANTHER:PTHR13068:SF19
SMART:SM00733	UniParc:UPI0004EE6B05	SEG:seg	:	:	:

Description

BnaC05g34150D

Coordinates

chrLK031909:+:990103..990930

Molecular Weight (calculated)

31305.0 Da

IEP (calculated)

10.133

GRAVY (calculated)

-0.244

Length

275 amino acids

Sequence
(BLAST)

001: MATVTASLRL QPLSSLSSSS SPPPSSRPLY LKFNTSHREN LRYLSSLGVI PQNPRLAPAV DNLPHILSAV NFLKSNGISD EDFPRLLYLC PQLFSPTFSI
101: SETDPVFDFL AGELGASAAE SRGLIVNCPS ILLSDVEYCL RPTLVYLKEL GVKNLNRASK TNAHVLNTRV EKLRAKMRFL KSIGFEHEEA ARVCGRIPAI
201: FGYSVEDNLR PKFEFLVYDM ERELEELKKF PQYFGFSLGK RIKPRHWHLK KKGVRLSLSR MLMWGDHKFY SKWKP

Best Arabidopsis Sequence Match ( AT3G18870.1 )
(BLAST)

001: MAVIASLHHL QPLSSFSSPP SPSSSKPLYL KFQTSHRENL RHLSSLGIVP QNPRLAPPAN DLSVILSAVN LLKSKGISDE DFPRLVFLCP QLFSPTFDIS
101: KLDPVFDFLT GELGASAEES RGLIVNCPNI LFSDVEYCLR PTLVYLKELG VRNLNRASKT NAHVLNTRVE KLRAKMRFLK SIGFEHEEAA RVCGRIPAIF
201: GYSVEDNLRP KFEFLVYDME RELEELKKFP QYFAFSLGKR IRPRHWHLKK KNVRVSLSRM LMWGDQKFYS KWKP

Arabidopsis Description

At3g18870 [Source:UniProtKB/TrEMBL;Acc:Q9LHN2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.