Factsheet for Solyc01g109550.2.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400001905	Potato	plastid	89.12	93.24
KRH40190	Soybean	cytosol	24.83	66.36
VIT_03s0063g02460.t01	Wine grape	plastid	56.8	60.51
AT3G18870.1	Thale cress	plastid	50.68	54.38
KRH01028	Soybean	plastid	49.32	52.92
CDX92284	Canola	plastid	49.32	52.73
Bra022367.1-P	Field mustard	plastid	48.98	52.36
CDX99300	Canola	plastid	48.98	52.36
GSMUA_Achr2P08550_001	Banana	plastid	48.64	52.19
Solyc02g021430.1.1	Tomato	plastid	28.57	27.45
Solyc01g007750.2.1	Tomato	plastid	27.89	25.87
Solyc05g007840.2.1	Tomato	plastid	27.55	24.7
Solyc11g044360.1.1	Tomato	cytosol	17.69	16.4
Solyc12g015640.1.1	Tomato	plastid	21.43	13.07
Solyc02g093940.2.1	Tomato	nucleus	21.09	12.81
Solyc03g081300.2.1	Tomato	plastid	18.37	10.98
Solyc11g017050.1.1	Tomato	extracellular	18.37	10.84
Solyc03g124040.2.1	Tomato	golgi, plastid	20.41	10.45
Solyc04g005630.2.1	Tomato	nucleus	18.71	10.19
Solyc01g109630.2.1	Tomato	mitochondrion	22.79	9.5

Protein Annotations

MapMan:15.6.2.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003690	GO:GO:0003723
GO:GO:0003727	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0008380	GO:GO:0009058
GO:GO:0009507	GO:GO:0009536	GO:GO:0009658	GO:GO:0009987	GO:GO:0016043	GO:GO:0019843
GO:GO:0032502	GO:GO:0042255	UniProt:K4B3G8	InterPro:MTERF	PFAM:PF02536	PANTHER:PTHR13068
PANTHER:PTHR13068:SF19	SMART:SM00733	EnsemblPlantsGene:Solyc01g109550.2	EnsemblPlants:Solyc01g109550.2.1	UniParc:UPI00027689D7	SEG:seg

Description

No Description!

Coordinates

chr1:-:96468443..96469420

Molecular Weight (calculated)

34530.0 Da

IEP (calculated)

9.578

GRAVY (calculated)

-0.233

Length

294 amino acids

Sequence
(BLAST)

001: MWSHMTNRQC RYMWLKEAMF LCSSIPTRRN CFFISATNIP FSSSPNPPLL LRFHTSHREN LRYLKSLGII KPGTKTYKTT PSTESLSQIL STVNFLNSKG
101: FSQADISRIA LVCDHVFSPE FNVESVFDFF KFDLGATPEE TQGLILRCPQ ILESNVPFCL RPTLLYLKEL DIGNLNLPTN LNAHLLNTRV DKLQEKVTFF
201: KGIGYSYEES AKFCARFPAI FGYSIEHNLW PKYEYLVEDM KRDLEELKLF PQYFAFSLRN RIVPRHLHLK ERNVIIPLKR MLLWSDQRFY AKWK

Best Arabidopsis Sequence Match ( AT3G18870.1 )
(BLAST)

001: MAVIASLHHL QPLSSFSSPP SPSSSKPLYL KFQTSHRENL RHLSSLGIVP QNPRLAPPAN DLSVILSAVN LLKSKGISDE DFPRLVFLCP QLFSPTFDIS
101: KLDPVFDFLT GELGASAEES RGLIVNCPNI LFSDVEYCLR PTLVYLKELG VRNLNRASKT NAHVLNTRVE KLRAKMRFLK SIGFEHEEAA RVCGRIPAIF
201: GYSVEDNLRP KFEFLVYDME RELEELKKFP QYFAFSLGKR IRPRHWHLKK KNVRVSLSRM LMWGDQKFYS KWKP

Arabidopsis Description

At3g18870 [Source:UniProtKB/TrEMBL;Acc:Q9LHN2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.