Factsheet for Solyc02g021430.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400080487	Potato	plastid	97.39	96.13
KRH12828	Soybean	plastid	59.48	60.26
AT2G34620.1	Thale cress	plastid	59.48	60.07
VIT_10s0003g04040.t01	Wine grape	plastid	67.65	58.81
KRH37793	Soybean	plastid	59.8	56.83
CDX84297	Canola	plastid	58.17	53.94
GSMUA_Achr6P31220_001	Banana	plastid	37.58	51.11
Os03t0785200-01	Rice	plastid	49.35	48.71
OQU90879	Sorghum	plastid	48.69	46.71
TraesCS5A01G423600.1	Wheat	plastid	47.39	45.31
TraesCS5B01G425900.1	Wheat	plastid	48.37	45.12
TraesCS5D01G432100.1	Wheat	plastid	48.04	44.95
Zm00001d011574_P001	Maize	cytosol, extracellular, plastid	22.22	44.44
Solyc05g007840.2.1	Tomato	plastid	40.85	38.11
Solyc01g007750.2.1	Tomato	plastid	35.62	34.38
Solyc01g109550.2.1	Tomato	mitochondrion	27.45	28.57
Solyc11g044360.1.1	Tomato	cytosol	21.24	20.5
Solyc02g093940.2.1	Tomato	nucleus	26.47	16.74
Solyc12g015640.1.1	Tomato	plastid	22.88	14.52
Solyc11g017050.1.1	Tomato	extracellular	20.26	12.45
Solyc03g124040.2.1	Tomato	golgi, plastid	20.59	10.98
Solyc04g005630.2.1	Tomato	nucleus	19.28	10.93
Solyc03g081300.2.1	Tomato	plastid	17.32	10.77
Solyc01g109630.2.1	Tomato	mitochondrion	24.51	10.64

Protein Annotations

Gene3D:1.25.70.10	MapMan:15.6.2.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003690
GO:GO:0003723	GO:GO:0003727	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0008380
GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009658	GO:GO:0009987	GO:GO:0016043
GO:GO:0019843	GO:GO:0032502	GO:GO:0042255	InterPro:IPR038538	UniProt:K4B4Z3	InterPro:MTERF
InterPro:MTERF_sf	PFAM:PF02536	PANTHER:PTHR13068	PANTHER:PTHR13068:SF78	SMART:SM00733	EnsemblPlantsGene:Solyc02g021430.1
EnsemblPlants:Solyc02g021430.1.1	UniParc:UPI000276881E	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr2:+:22711492..22712412

Molecular Weight (calculated)

34878.5 Da

IEP (calculated)

8.631

GRAVY (calculated)

-0.148

Length

306 amino acids

Sequence
(BLAST)

001: MTSAATSFHS CLCFSVQKLP SPSSSASCSD QQMSLLSPTK PKSILQNNPL YQPTHKNISL QFKEKILCLE IMGVDSGKAL SQNPCLHTAS LHAIHSIITF
101: LQSKGLYQKD FARIIGMCPT ILTSDIRSEL NPVFNFLSKE LRVPEDNFRK VINKCPRLLI CSVKDQLKPT LFYLQRLGFT DVHHLAYQDP ILLVSSVENT
201: LIPKLHYLVS LGFTRREAVE MTLRCPGLFT FSIQNNFKPK FEYFSQEMEG ELDELKDFPQ YFAFSLDKRI KPRHIQLVDN GVSIPLSLML KTTDEEFNHL
301: ISQKTR

Best Arabidopsis Sequence Match ( AT2G34620.1 )
(BLAST)

001: MSAALSSSLY ISPKKPSCPQ QSQSTFLSTK PTTIKTNLHS HPLFTVADQT VTLQMKEKIL CLELMGIDSG KALSLNPCLC SAPLDSIQSV LHFLQSKGIY
101: PNDLPRILGM CPKILTSDVR TELYPVFMFL SNDLHVPENA FRRVIKKCPR LLISSVEDQL KPALFYLQRL GLKDLEALAY QDPILLVSSV EHTLIPKLRF
201: LESIGFSRPE AIGMILRCPA LFTFSIENNF KPKLDYFMSE IKGKLENLKE FPQYFAFSLE KRIKPRHLES MERGLELPLS LMLKSTDEEF EQLLTNPSSV
301: ANV

Arabidopsis Description

Mitochondrial transcription termination factor family protein [Source:UniProtKB/TrEMBL;Acc:O64685]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.