Factsheet for VIT_10s0003g04040.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
mitochondrion 2
endoplasmic reticulum 1
plasma membrane 1
plastid 3
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g021430.1.1	Tomato	plastid	58.81	67.65
PGSC0003DMT400080487	Potato	plastid	59.38	67.42
KRH12828	Soybean	plastid	55.68	64.9
KRH37793	Soybean	plastid	58.81	64.29
AT2G34620.1	Thale cress	plastid	54.55	63.37
CDX84297	Canola	plastid	54.83	58.48
GSMUA_Achr6P31220_001	Banana	plastid	34.09	53.33
Os03t0785200-01	Rice	plastid	46.31	52.58
TraesCS5A01G423600.1	Wheat	plastid	47.16	51.88
OQU90879	Sorghum	plastid	46.59	51.41
TraesCS5B01G425900.1	Wheat	plastid	47.73	51.22
TraesCS5D01G432100.1	Wheat	plastid	46.88	50.46
Zm00001d011574_P001	Maize	cytosol, extracellular, plastid	21.88	50.33
VIT_01s0010g03740.t01	Wine grape	plastid	36.65	41.21
VIT_03s0063g02460.t01	Wine grape	plastid	28.12	35.87
VIT_08s0007g02500.t01	Wine grape	plastid	33.81	35.21
VIT_14s0171g00230.t01	Wine grape	plastid	23.01	16.36
VIT_03s0038g04180.t01	Wine grape	cytosol, plastid	15.62	15.54
VIT_11s0016g02240.t01	Wine grape	mitochondrion	19.32	14.14
VIT_03s0063g02590.t01	Wine grape	cytosol	22.73	14.06
VIT_09s0054g01030.t01	Wine grape	plastid	22.16	12.98
VIT_07s0104g00720.t01	Wine grape	mitochondrion	19.32	12.95
VIT_19s0090g01770.t01	Wine grape	plastid	18.47	12.92
VIT_16s0098g00970.t01	Wine grape	plastid	20.17	3.52

Protein Annotations

Gene3D:1.25.70.10	EntrezGene:100853685	wikigene:100853685	MapMan:15.6.2.2	EMBL:AM441562	ProteinID:CAN80627
ProteinID:CAN80627.1	ProteinID:CCB55815	ProteinID:CCB55815.1	UniProt:F6HLU1	EMBL:FN595992	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003690	GO:GO:0003723	GO:GO:0003727	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0008380	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536
GO:GO:0009658	GO:GO:0009987	GO:GO:0016043	GO:GO:0019843	GO:GO:0032502	GO:GO:0042255
InterPro:IPR038538	EntrezGene:LOC100853685	wikigene:LOC100853685	InterPro:MTERF	InterPro:MTERF_sf	PFAM:PF02536
PANTHER:PTHR13068	PANTHER:PTHR13068:SF78	SMART:SM00733	TIGR:TC65869	UniParc:UPI000210966C	ArrayExpress:VIT_10s0003g04040
EnsemblPlantsGene:VIT_10s0003g04040	EnsemblPlants:VIT_10s0003g04040.t01	RefSeq:XP_003633033	RefSeq:XP_003633033.1	SEG:seg	:

Description

No Description!

Coordinates

chr10:+:6867305..6869411

Molecular Weight (calculated)

39613.6 Da

IEP (calculated)

9.398

GRAVY (calculated)

-0.076

Length

352 amino acids

Sequence
(BLAST)

001: MVVYFVDMRH PDQCCNKVVV GTLTPLLSII LSFKRLRCYE ASRSVNNTMP STAATAYHSS PCFSLQSPSS LPSNSHQPNN PLTIKPKNVL QKHPLYTPAH
101: SNLSLQFKEK ILCLEIMGVD SGKALSLNPS LHTATLHSIH SIISFLQSKG IHQKDLGRIF GMCPKLLTSN IRTDLIPVFN FLSQDLKVPD QSFRRVINKC
201: PRLLVSSVRD QLKPALIFLQ RLGFQDLEAL AHQDPVLLVS SVEKTLIPKL EYLVSLGMSR ADAVGMVLRC PGLFTFSVEN NFKPKFEYFV GEMEGNLEEL
301: KEFPQYFAFS LEKRIKPRHM EAVQNGVKVP LALMLKSTDE EFRELMTRHG SG

Best Arabidopsis Sequence Match ( AT2G34620.1 )
(BLAST)

001: MSAALSSSLY ISPKKPSCPQ QSQSTFLSTK PTTIKTNLHS HPLFTVADQT VTLQMKEKIL CLELMGIDSG KALSLNPCLC SAPLDSIQSV LHFLQSKGIY
101: PNDLPRILGM CPKILTSDVR TELYPVFMFL SNDLHVPENA FRRVIKKCPR LLISSVEDQL KPALFYLQRL GLKDLEALAY QDPILLVSSV EHTLIPKLRF
201: LESIGFSRPE AIGMILRCPA LFTFSIENNF KPKLDYFMSE IKGKLENLKE FPQYFAFSLE KRIKPRHLES MERGLELPLS LMLKSTDEEF EQLLTNPSSV
301: ANV

Arabidopsis Description

Mitochondrial transcription termination factor family protein [Source:UniProtKB/TrEMBL;Acc:O64685]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.