Factsheet for VIT_14s0171g00230.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400052092	Potato	mitochondrion	68.48	70.04
Solyc02g093940.2.1	Tomato	nucleus	67.88	69.42
KRH39012	Soybean	cytosol	62.63	69.35
KRH57654	Soybean	mitochondrion, plastid	65.45	67.5
KRG94311	Soybean	plastid	63.03	65.96
CDY29749	Canola	cytosol	62.02	62.65
Bra036876.1-P	Field mustard	cytosol	62.02	62.27
CDY16267	Canola	cytosol	61.01	62.27
AT4G14605.2	Thale cress	cytosol	60.4	60.65
GSMUA_Achr3P02690_001	Banana	plastid	59.6	56.95
TraesCS6B01G244200.1	Wheat	plastid	50.91	52.07
TraesCS6A01G214200.1	Wheat	plastid	50.91	52.07
TraesCS6D01G196900.1	Wheat	plastid	50.91	51.96
HORVU6Hr1G054650.2	Barley	plastid	50.71	51.65
KXG30576	Sorghum	cytosol	50.51	50.81
Zm00001d017130_P001	Maize	plastid	49.7	50.62
VIT_01s0010g03740.t01	Wine grape	plastid	17.37	27.48
VIT_03s0063g02460.t01	Wine grape	plastid	14.75	26.45
VIT_03s0038g04180.t01	Wine grape	cytosol, plastid	17.37	24.29
VIT_10s0003g04040.t01	Wine grape	plastid	16.36	23.01
VIT_08s0007g02500.t01	Wine grape	plastid	15.35	22.49
VIT_11s0016g02240.t01	Wine grape	mitochondrion	17.17	17.67
VIT_09s0054g01030.t01	Wine grape	plastid	19.39	15.97
VIT_03s0063g02590.t01	Wine grape	cytosol	18.18	15.82
VIT_19s0090g01770.t01	Wine grape	plastid	15.96	15.71
VIT_07s0104g00720.t01	Wine grape	mitochondrion	16.16	15.24
VIT_16s0098g00970.t01	Wine grape	plastid	17.98	4.41

Protein Annotations

Gene3D:1.25.70.10	EntrezGene:100262724	wikigene:100262724	MapMan:15.6.2.2	ProteinID:CCB62224	ProteinID:CCB62224.1
UniProt:F6I5K6	EMBL:FN596749	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003690
GO:GO:0003723	GO:GO:0003727	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0008380
GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009658	GO:GO:0009987	GO:GO:0016043
GO:GO:0019843	GO:GO:0032502	GO:GO:0042255	InterPro:IPR038538	EntrezGene:LOC100262724	wikigene:LOC100262724
InterPro:MTERF	InterPro:MTERF_sf	PFAM:PF02536	PANTHER:PTHR13068	PANTHER:PTHR13068:SF9	SMART:SM00733
UniParc:UPI0002109BE2	ArrayExpress:VIT_14s0171g00230	EnsemblPlantsGene:VIT_14s0171g00230	EnsemblPlants:VIT_14s0171g00230.t01	RefSeq:XP_003633786	RefSeq:XP_003633786.1
RefSeq:XP_010660788.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr14:+:26071428..26073639

Molecular Weight (calculated)

55194.9 Da

IEP (calculated)

9.525

GRAVY (calculated)

-0.127

Length

495 amino acids

Sequence
(BLAST)

001: MRAYSGIRSS ELPSLSRGPF SIPRNRAYFP GKVSFCQAKF AESGVDGSSI SLRVVPPSLL AAEKEEAKAV LSLFLKKQGL SNAVAARTIN KSELFIDHLV
101: SRLHSVHKSR YLVGRELTTL EIRDALIPYL ETLFEEHGDI LVDAVENFPN QPDKEIPVAP VSSSSLSSSS SSSSLSSSSS SSSSNPKLDS KKIKAMARVS
201: EVGPSGELPP NILYLLELGL ELDQIKAMTR RFPAFPYYSL EGKIMPVVQF LLDLGVPKSG IPMILYKRPQ LCGVSLSENI IPTMAFLENL GVDKKQWAKV
301: IHRFPGFLTY SRQKVKATVD FLEEMGLSAE SIGKVLTRCP NIISYSVEDK LRPTAEYFRS LGVDVAILLH RSPPTFGLSI EANLKPITEF FLEKGFSIEE
401: VSTMISRYGP LYTFSLADSL GPKWEFFLTM DYPRTELVKF PQYFGYSLEE RIKPRYATVR ESGVRLLLNQ VLSLSESEFD KALKRKMKKM HDGKS

Best Arabidopsis Sequence Match ( AT4G14605.2 )
(BLAST)

001: MQSLSQLGPS EIFLVARREK PSTRAQLWFT GRLSFRQETN GIRLKNRVEF SPRPVPPNLI AAEKEEAKAV LTLFFKKQGL SNSLSSRLIN KSDLFIDHLV
101: SRLHSVHKAR YLVGRELTTL EIRDSLIPYL EQLHEEHGDL LAELVVSFPD PPAEPRLVAS SPVSVLPPRG DTDSAADTRK LRAVSRVSEL DTEGALRPQT
201: LYLLDLGLNL EQIKTITRKF AAFPYYSLDG KIKPVVEFLL DLGIPKSDIP TILCKRPQIC GISLTDNLKP TMAFLETLGI DKNQWAKIIS RFPAILTYSR
301: QKLTSTVEFL SQTGLTEEQI GRILTRCPNI MSYSVEDKLR PTMEYFRSLN VDVAVLLHRC PQTFGLSIES NLKPVTEFFL EKGFGLDEIG IMISRYGALY
401: TFSLKENVMP KWDYFQTMDY PKSELVKFPQ FFGYSLQERI KPRYELVQRS GVRLLLNQVL SLSGIEFEKV VKKKMMKLVS NNVIAEQSSG GLL

Arabidopsis Description

MTERF5Transcription termination factor MTERF5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4JVI3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.