Factsheet for PGSC0003DMT400052092

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 5
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g093940.2.1	Tomato	nucleus	97.31	97.31
VIT_14s0171g00230.t01	Wine grape	plastid	70.04	68.48
KRH39012	Soybean	cytosol	62.19	67.34
KRH57654	Soybean	mitochondrion, plastid	65.5	66.04
KRG94311	Soybean	plastid	64.46	65.96
CDY29749	Canola	cytosol	60.95	60.2
Bra036876.1-P	Field mustard	cytosol	61.16	60.04
CDY16267	Canola	cytosol	60.12	60.0
AT4G14605.2	Thale cress	cytosol	60.54	59.43
GSMUA_Achr3P02690_001	Banana	plastid	58.26	54.44
TraesCS6B01G244200.1	Wheat	plastid	51.24	51.24
TraesCS6A01G214200.1	Wheat	plastid	51.24	51.24
KXG30576	Sorghum	cytosol	52.07	51.22
TraesCS6D01G196900.1	Wheat	plastid	51.24	51.13
Zm00001d017130_P001	Maize	plastid	50.83	50.62
HORVU6Hr1G054650.2	Barley	plastid	50.83	50.62
PGSC0003DMT400047490	Potato	mitochondrion	7.44	38.3
PGSC0003DMT400075363	Potato	cytosol	12.6	29.33
PGSC0003DMT400047424	Potato	plastid	17.56	26.73
PGSC0003DMT400080487	Potato	plastid	16.12	25.16
PGSC0003DMT400059549	Potato	cytosol	16.53	24.39
PGSC0003DMT400085903	Potato	plastid	16.12	24.38
PGSC0003DMT400076662	Potato	cytosol	13.43	22.26
PGSC0003DMT400001905	Potato	plastid	12.4	21.35
PGSC0003DMT400023814	Potato	mitochondrion	17.98	17.68
PGSC0003DMT400001588	Potato	plastid	17.56	16.41
PGSC0003DMT400023772	Potato	plastid	19.83	16.08
PGSC0003DMT400007420	Potato	mitochondrion	15.7	15.93
PGSC0003DMT400001916	Potato	plastid	18.8	13.21

Protein Annotations

Gene3D:1.25.70.10	EntrezGene:102599415	MapMan:15.6.2.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003690	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR038538	UniProt:M1BSS7	InterPro:MTERF	InterPro:MTERF_sf
PFAM:PF02536	EnsemblPlantsGene:PGSC0003DMG400020220	PGSC:PGSC0003DMG400020220	EnsemblPlants:PGSC0003DMT400052092	PANTHER:PTHR13068	PANTHER:PTHR13068:SF9
SMART:SM00733	UniParc:UPI0002968862	RefSeq:XP_006338679.1	SEG:seg	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400020220]

Coordinates

chr2:-:47828887..47832360

Molecular Weight (calculated)

54789.4 Da

IEP (calculated)

9.656

GRAVY (calculated)

0.035

Length

484 amino acids

Sequence
(BLAST)

001: MISFMQLRIP NAKLAFLSRT SRVPLYRIVL SFPQKVFFCA AKYSESEVDG SFSLRLVPPT LVAAEKEEAK AVLTLFLKKQ GLSNALAARA INRSESFIDH
101: LVSRLHSVHK SRYLVGRELT TLEIRDALIP YLEALHEEYG SILVDVVESF PNPPVVEKIE ETVEKVPIPV TPASPPSAVL DSKKLKALAR VTDNGPTGKL
201: PPHILYLVEL GMDIERIRVI TRKFPAFAYY SLEGKIKPVV EFLLDLGVPR SQIPTILSKR PQLCGISLSD NLIPTMTFLE ELGVDKEQWA KVIYRFPALL
301: TYSRPKLRAT VDFLYEMGLS AECVSKVLTR CPNIISYSVE DKLRPATEYF RSMGVDVGVL LYRCPQTFGL SIEANIKPAT EFFKDKGFSM TEIATMVSRY
401: GALYTFSLAK LVLKWEFFLT MGYPRTELVK FPQYFGYSLE ERIKPRFGIM TDKGVRLLLN QMLSLSEDGF NKALKRKLQK LIDN

Best Arabidopsis Sequence Match ( AT4G14605.2 )
(BLAST)

001: MQSLSQLGPS EIFLVARREK PSTRAQLWFT GRLSFRQETN GIRLKNRVEF SPRPVPPNLI AAEKEEAKAV LTLFFKKQGL SNSLSSRLIN KSDLFIDHLV
101: SRLHSVHKAR YLVGRELTTL EIRDSLIPYL EQLHEEHGDL LAELVVSFPD PPAEPRLVAS SPVSVLPPRG DTDSAADTRK LRAVSRVSEL DTEGALRPQT
201: LYLLDLGLNL EQIKTITRKF AAFPYYSLDG KIKPVVEFLL DLGIPKSDIP TILCKRPQIC GISLTDNLKP TMAFLETLGI DKNQWAKIIS RFPAILTYSR
301: QKLTSTVEFL SQTGLTEEQI GRILTRCPNI MSYSVEDKLR PTMEYFRSLN VDVAVLLHRC PQTFGLSIES NLKPVTEFFL EKGFGLDEIG IMISRYGALY
401: TFSLKENVMP KWDYFQTMDY PKSELVKFPQ FFGYSLQERI KPRYELVQRS GVRLLLNQVL SLSGIEFEKV VKKKMMKLVS NNVIAEQSSG GLL

Arabidopsis Description

MTERF5Transcription termination factor MTERF5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4JVI3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.