Factsheet for PGSC0003DMT400047490

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400047424	Potato	plastid	100.0	29.56
Solyc05g007840.2.1	Tomato	plastid	90.43	25.91
VIT_01s0010g03740.t01	Wine grape	plastid	80.85	24.28
Bra024793.1-P	Field mustard	extracellular	70.21	23.24
CDY45184	Canola	extracellular, mitochondrion	70.21	23.16
KRH74890	Soybean	cytosol, plasma membrane, plastid	64.89	23.02
CDY03022	Canola	extracellular	69.15	22.89
AT2G03050.2	Thale cress	cytosol, golgi, mitochondrion, plastid	68.09	22.54
GSMUA_Achr5P23270_001	Banana	mitochondrion	70.21	21.36
KRH70749	Soybean	plastid	67.02	21.36
PGSC0003DMT400075363	Potato	cytosol	46.81	21.15
PGSC0003DMT400080487	Potato	plastid	53.19	16.13
PGSC0003DMT400085903	Potato	plastid	46.81	13.75
PGSC0003DMT400001905	Potato	plastid	38.3	12.81
GSMUA_Achr6P02570_001	Banana	plastid	30.85	12.03
PGSC0003DMT400076662	Potato	cytosol	28.72	9.25
PGSC0003DMT400052092	Potato	mitochondrion	38.3	7.44
PGSC0003DMT400059549	Potato	cytosol	25.53	7.32
PGSC0003DMT400007420	Potato	mitochondrion	31.91	6.29
PGSC0003DMT400023814	Potato	mitochondrion	31.91	6.1
PGSC0003DMT400023772	Potato	plastid	37.23	5.86
PGSC0003DMT400001588	Potato	plastid	26.6	4.83
PGSC0003DMT400001916	Potato	plastid	35.11	4.79

Protein Annotations

Gene3D:1.25.70.10	MapMan:15.6.2.2	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003690	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR038538	UniProt:M1BKU8	InterPro:MTERF	InterPro:MTERF_sf
PFAM:PF02536	EnsemblPlantsGene:PGSC0003DMG400018453	PGSC:PGSC0003DMG400018453	EnsemblPlants:PGSC0003DMT400047490	PANTHER:PTHR13068	PANTHER:PTHR13068:SF36
SMART:SM00733	UniParc:UPI00029515D3	:	:	:	:

Description

MTERF domain containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400018453]

Coordinates

chr5:-:4598814..4599887

Molecular Weight (calculated)

11175.8 Da

IEP (calculated)

10.259

GRAVY (calculated)

-0.327

Length

94 amino acids

Sequence
(BLAST)

1: MVLRSPGLLT FSIEKNFRPK VEYFLKEMNG DIGELKRFPQ YFSFSLERKI KPRHRLLVEH GFSLSLSEML KVSDGEFNAR LIEMRLRIVE DKQL

Best Arabidopsis Sequence Match ( AT2G03050.1 )
(BLAST)

001: MIARCSLFPP PCFSAVRIRC FAGETSDTGI LFREKLIYLQ DLNVDPHKAL RVNPSLRSAP ISSVVSVETL LSSTGLSRPA VGRILDMFPD LLTSDPESEI
101: LPVLRFLSNE ISISEQDIPK SISRCPRLLI SSVDYQLRPA LTFLKTLGFV GRDTITSRNT VLLVSNVERT LIPKIEYLEE GLGFTREEVA KMVVRSPALL
201: TYSVDNNLVP KVEFFIEEMR GDVKELKRFP QYFSFSLERK IKPRHRLLKE HGILMPLSEM LKVSDGQFNH WLLELRLRSA ERR

Arabidopsis Description

MTERF1SOLDAT10 [Source:UniProtKB/TrEMBL;Acc:A0A178VYV9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.