Factsheet for PGSC0003DMT400085903

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g007750.2.1	Tomato	plastid	91.88	92.74
PGSC0003DMT400075363	Potato	cytosol	58.44	89.9
VIT_08s0007g02500.t01	Wine grape	plastid	56.25	53.25
PGSC0003DMT400047490	Potato	mitochondrion	13.75	46.81
KRH13722	Soybean	plastid	49.69	46.76
AT2G36000.1	Thale cress	plastid	48.44	46.55
KRH43735	Soybean	plastid	49.06	46.45
GSMUA_AchrUn_...	Banana	plastid	47.5	45.1
Bra017269.1-P	Field mustard	plastid	46.56	45.02
Os03t0360600-00	Rice	cytosol, mitochondrion	33.44	35.55
PGSC0003DMT400080487	Potato	plastid	34.38	35.48
Zm00001d029242_P001	Maize	plastid	33.12	34.98
Zm00001d047442_P001	Maize	plastid	32.19	34.56
TraesCS1A01G084300.1	Wheat	mitochondrion	33.75	34.39
TraesCS4D01G156100.1	Wheat	mitochondrion	33.75	34.39
KXG39318	Sorghum	plastid	33.44	34.19
TraesCS4B01G156500.1	Wheat	mitochondrion	33.44	34.08
HORVU4Hr1G045210.1	Barley	plastid	34.69	32.74
PGSC0003DMT400047424	Potato	plastid	30.31	30.5
PGSC0003DMT400001905	Potato	plastid	26.25	29.89
PGSC0003DMT400076662	Potato	cytosol	19.38	21.23
PGSC0003DMT400059549	Potato	cytosol	18.75	18.29
PGSC0003DMT400052092	Potato	mitochondrion	24.38	16.12
PGSC0003DMT400007420	Potato	mitochondrion	21.25	14.26
PGSC0003DMT400023814	Potato	mitochondrion	21.88	14.23
PGSC0003DMT400001916	Potato	plastid	28.12	13.06
PGSC0003DMT400001588	Potato	plastid	20.62	12.74
PGSC0003DMT400023772	Potato	plastid	21.25	11.39

Protein Annotations

Gene3D:1.25.70.10	MapMan:15.6.2.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003690
GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR038538	UniProt:M1DAI8	InterPro:MTERF	InterPro:MTERF_sf	PFAM:PF02536
EnsemblPlantsGene:PGSC0003DMG400035474	PGSC:PGSC0003DMG400035474	EnsemblPlants:PGSC0003DMT400085903	PANTHER:PTHR13068	PANTHER:PTHR13068:SF46	SMART:SM00733
UniParc:UPI000295A595	SEG:seg	:	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400035474]

Coordinates

chr1:+:3306708..3307670

Molecular Weight (calculated)

36568.7 Da

IEP (calculated)

9.171

GRAVY (calculated)

-0.071

Length

320 amino acids

Sequence
(BLAST)

001: MQETLHFSSS SSFSLPKSSI SPPKSFKSST ISYPQHPKPP TPISTSTSFP TPPPPQNFHL QEKLLFLDSL GVDSLHCLSS QPLIVSSSLS DLKSVIDFLY
101: SVNLSILDVR RVLHMCPEIL TAGISTTLRP AVTFLLREAL VTGEKLPGIL RRRPRLLTKC VEKNLRPTLY FLQSTIGIED VSKCATLLSC SVETKFIPRL
201: DYLQRIGFSR RDAKVMFRRF PSLFCYSIEE NLEPKFDYFV VEMGRELKEL IVFPQYFSFS LENRIKPRHK MCVEKGVCLS LPVMLKSHES RFRDRLEVCC
301: SSSMPVRQSP FWCTNFDHIM

Best Arabidopsis Sequence Match ( AT2G36000.1 )
(BLAST)

001: MQQEALSFLS SSLPSLHHNF PSLSRLRFNN FPALSFKPNT SSSSSSFFKS PDIPSLSSTT TTTTTTETLE SSIHEKLIYL DSLGIDFLTL INRHPPLLST
101: ALSAVESVVD YMTTPPINFT LQDFRRLVSM CPELLTSPLT SHTIPVITFL LREVGVDSIF DLRQALRRRP RLLACSVDHQ LRPTLYFLQR IGILDPHKHT
201: YLLSCSVDNK LVPRIDYFEK LGFSRRSATA MFKRFPQLFN YSIAENYEPK LKYLMVEMGR DVREVLEFPQ YFSFSLENRI KPRHEACAAK GVRFPLPVML
301: KTNEAGFRDT LEVCCDSSPP LKTSRLVTVQ KDS

Arabidopsis Description

At2g36000/F11F19.9 [Source:UniProtKB/TrEMBL;Acc:Q9SJ50]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.