Factsheet for TraesCS4B01G156500.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
cytosol 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G156100.1	Wheat	mitochondrion	98.09	98.09
TraesCS1A01G084300.1	Wheat	mitochondrion	96.5	96.5
HORVU4Hr1G045210.1	Barley	plastid	92.99	86.14
Os03t0360600-00	Rice	cytosol, mitochondrion	79.94	83.39
Zm00001d047442_P001	Maize	plastid	69.75	73.49
KXG39318	Sorghum	plastid	72.29	72.52
Zm00001d029242_P001	Maize	plastid	69.11	71.62
PGSC0003DMT400075363	Potato	cytosol	28.98	43.75
GSMUA_AchrUn_...	Banana	plastid	39.49	36.8
Bra017269.1-P	Field mustard	plastid	37.9	35.95
AT2G36000.1	Thale cress	plastid	36.31	34.23
PGSC0003DMT400085903	Potato	plastid	34.08	33.44
VIT_08s0007g02500.t01	Wine grape	plastid	35.67	33.14
Solyc01g007750.2.1	Tomato	plastid	32.48	32.18
KRH13722	Soybean	plastid	34.71	32.06
KRH43735	Soybean	plastid	34.08	31.66
TraesCS5B01G425900.1	Wheat	plastid	27.39	26.22
TraesCS6B01G219200.1	Wheat	plastid	16.56	18.44
TraesCS7B01G141200.1	Wheat	cytosol	17.2	16.22
TraesCS6B01G244200.1	Wheat	plastid	23.89	15.5
TraesCS1B01G265700.1	Wheat	cytosol	19.75	14.32
TraesCS2B01G218100.1	Wheat	plastid	20.7	13.03
TraesCS2B01G267000.1	Wheat	mitochondrion	24.2	12.54
TraesCS6B01G376100.1	Wheat	mitochondrion	18.47	11.81
TraesCS5B01G365700.1	Wheat	plastid	18.15	9.74

Protein Annotations

Gene3D:1.25.70.10	MapMan:15.6.2.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003690
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536
GO:GO:0009987	InterPro:IPR038538	InterPro:MTERF	InterPro:MTERF_sf	PFAM:PF02536	PANTHER:PTHR13068
PANTHER:PTHR13068:SF47	SMART:SM00733	EnsemblPlantsGene:TraesCS4B01G156500	EnsemblPlants:TraesCS4B01G156500.1	SEG:seg	:

Description

No Description!

Coordinates

chr4B:+:289102565..289103509

Molecular Weight (calculated)

34554.0 Da

IEP (calculated)

9.578

GRAVY (calculated)

-0.081

Length

314 amino acids

Sequence
(BLAST)

001: MEELLLRHGR LSRPVATRRL RVVAVALRSR PSSSLAVPGF PPATAPAPAP ALEHVLPSPH VAADAAAVLL EAGVRPEDLR RAAGMCPELM SVPVETITAA
101: LRFLTDEAGV PTEELPRVLR RRPRLLVSSA AARLRPTLYF LRALGVPDLH RRADLLSFSV EDKLLPRIEF LESLGLPSPA ARSMARRFPA LFYYGIDGNM
201: RPKAEYLLGV MGRDADELFD FPEYFSYALD TRIATRHEAC AARGVRMPLP TMLRPGEPKF EDCLAGCVGS TPPRRRSPLW HAYWVDGDGA GVGAVVEKAK
301: RDDAIVASYR HVHY

Best Arabidopsis Sequence Match ( AT2G34620.1 )
(BLAST)

001: MSAALSSSLY ISPKKPSCPQ QSQSTFLSTK PTTIKTNLHS HPLFTVADQT VTLQMKEKIL CLELMGIDSG KALSLNPCLC SAPLDSIQSV LHFLQSKGIY
101: PNDLPRILGM CPKILTSDVR TELYPVFMFL SNDLHVPENA FRRVIKKCPR LLISSVEDQL KPALFYLQRL GLKDLEALAY QDPILLVSSV EHTLIPKLRF
201: LESIGFSRPE AIGMILRCPA LFTFSIENNF KPKLDYFMSE IKGKLENLKE FPQYFAFSLE KRIKPRHLES MERGLELPLS LMLKSTDEEF EQLLTNPSSV
301: ANV

Arabidopsis Description

Mitochondrial transcription termination factor family protein [Source:UniProtKB/TrEMBL;Acc:O64685]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.