Factsheet for Bra017269.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT2G36000.1	Thale cress	plastid	80.66	80.18
PGSC0003DMT400075363	Potato	cytosol	35.35	56.25
VIT_08s0007g02500.t01	Wine grape	plastid	49.85	48.82
PGSC0003DMT400085903	Potato	plastid	45.02	46.56
Solyc01g007750.2.1	Tomato	plastid	43.5	45.43
KRH43735	Soybean	plastid	44.41	43.49
KRH13722	Soybean	plastid	44.41	43.24
Os03t0360600-00	Rice	cytosol, mitochondrion	37.16	40.86
GSMUA_AchrUn_...	Banana	plastid	40.18	39.47
Zm00001d047442_P001	Maize	plastid	34.74	38.59
Bra024793.1-P	Field mustard	extracellular	32.93	38.38
Zm00001d029242_P001	Maize	plastid	35.05	38.28
TraesCS4D01G156100.1	Wheat	mitochondrion	36.25	38.22
TraesCS4B01G156500.1	Wheat	mitochondrion	35.95	37.9
TraesCS1A01G084300.1	Wheat	mitochondrion	35.65	37.58
KXG39318	Sorghum	plastid	35.35	37.38
HORVU4Hr1G045210.1	Barley	plastid	36.56	35.69
Bra022367.1-P	Field mustard	plastid	25.68	30.91
Bra012812.1-P	Field mustard	cytosol	17.82	17.61
Bra028970.1-P	Field mustard	plastid	22.96	15.45
Bra036876.1-P	Field mustard	cytosol	22.36	15.01
Bra004800.1-P	Field mustard	cytosol	20.24	14.99
Bra003005.1-P	Field mustard	plastid	20.24	13.43
Bra031213.1-P	Field mustard	plastid	23.26	12.28
Bra036228.1-P	Field mustard	golgi, mitochondrion, plastid	19.64	12.24

Protein Annotations

Gene3D:1.25.70.10	MapMan:15.6.2.2	EnsemblPlantsGene:Bra017269	EnsemblPlants:Bra017269.1	EnsemblPlants:Bra017269.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003690	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	InterPro:IPR038538	UniProt:M4DL88
InterPro:MTERF	InterPro:MTERF_sf	PFAM:PF02536	PANTHER:PTHR13068	PANTHER:PTHR13068:SF46	SMART:SM00733
UniParc:UPI000254404D	SEG:seg	:	:	:	:

Description

AT2G36000 (E=1e-126) | mitochondrial transcription termination factor-related / mTERF-related

Coordinates

chrA04:+:15648561..15649556

Molecular Weight (calculated)

37604.8 Da

IEP (calculated)

9.447

GRAVY (calculated)

-0.131

Length

331 amino acids

Sequence
(BLAST)

001: MQQEALSFLS STLPPRNHHH LFPPFSRLRL HNFPSLSFKP NSSPSSIFFP PNPPDSLSSA PSAAGALESD IHEKLLYLDT LGIDFLTLLN RHPPLLSSPL
101: SAVKSVVDYM TTPPINFSLP DLRRLVSMCP ELLTSPLTSH TIPVITFLLR EVGVDSTFDL RQALRRRPRL LACSVDLQLR PTLYFLRGIG ILEPRRHTYL
201: LSCSVEGKLL PRIEFFERLG FSRRSAAAMF KRFPQLFNYS IGENYEPKLN YLMGEMGRDV REVLEFPQYF SFSLENRIKP RHVACAGRRV RLPLAVMLKT
301: KEDGFRDALE VCCDSSPPLK TSRLCCVQKD S

Best Arabidopsis Sequence Match ( AT2G36000.1 )
(BLAST)

001: MQQEALSFLS SSLPSLHHNF PSLSRLRFNN FPALSFKPNT SSSSSSFFKS PDIPSLSSTT TTTTTTETLE SSIHEKLIYL DSLGIDFLTL INRHPPLLST
101: ALSAVESVVD YMTTPPINFT LQDFRRLVSM CPELLTSPLT SHTIPVITFL LREVGVDSIF DLRQALRRRP RLLACSVDHQ LRPTLYFLQR IGILDPHKHT
201: YLLSCSVDNK LVPRIDYFEK LGFSRRSATA MFKRFPQLFN YSIAENYEPK LKYLMVEMGR DVREVLEFPQ YFSFSLENRI KPRHEACAAK GVRFPLPVML
301: KTNEAGFRDT LEVCCDSSPP LKTSRLVTVQ KDS

Arabidopsis Description

At2g36000/F11F19.9 [Source:UniProtKB/TrEMBL;Acc:Q9SJ50]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.