Factsheet for Bra028970.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 1
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	cytosol, plastid
Predotar:	secretory
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY36755	Canola	nucleus, vacuole	99.39	99.19
AT5G55580.1	Thale cress	plastid	89.23	88.51
PGSC0003DMT400076662	Potato	cytosol	45.33	76.37
KRH73870	Soybean	plastid	63.62	63.88
KRH14270	Soybean	plastid	63.82	63.18
Solyc12g015640.1.1	Tomato	plastid	57.52	58.71
GSMUA_Achr3P29890_001	Banana	plastid	56.91	55.23
VIT_19s0090g01770.t01	Wine grape	plastid	56.3	55.07
EER97446	Sorghum	mitochondrion	53.66	52.17
TraesCS2D01G198500.1	Wheat	plastid	49.39	51.59
Os07t0583200-01	Rice	endoplasmic reticulum, plastid	52.24	51.09
TraesCS2B01G218100.1	Wheat	plastid	51.22	50.5
HORVU2Hr1G036490.17	Barley	mitochondrion	51.42	50.3
TraesCS2A01G189200.1	Wheat	plastid	50.81	50.1
Zm00001d006700_P003	Maize	mitochondrion, plastid	53.46	45.66
Bra024793.1-P	Field mustard	extracellular	14.23	24.65
Bra022367.1-P	Field mustard	plastid	13.62	24.36
Bra017269.1-P	Field mustard	plastid	15.45	22.96
Bra012812.1-P	Field mustard	cytosol	13.62	20.0
Bra036876.1-P	Field mustard	cytosol	16.87	16.84
Bra004800.1-P	Field mustard	cytosol	15.04	16.55
Bra036228.1-P	Field mustard	golgi, mitochondrion, plastid	17.28	16.01
Bra003005.1-P	Field mustard	plastid	14.84	14.63
Bra031213.1-P	Field mustard	plastid	16.46	12.92

Protein Annotations

Gene3D:1.25.70.10	MapMan:15.6.2.2	EnsemblPlantsGene:Bra028970	EnsemblPlants:Bra028970.1	EnsemblPlants:Bra028970.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003690	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006355	GO:GO:0006950	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009628
GO:GO:0009651	GO:GO:0009658	GO:GO:0009987	GO:GO:0016043	GO:GO:0048364	GO:GO:0048367
InterPro:IPR038538	UniProt:M4EJK4	InterPro:MTERF	InterPro:MTERF_sf	PFAM:PF02536	PANTHER:PTHR13068
PANTHER:PTHR13068:SF13	SMART:SM00733	UniParc:UPI000253FE6C	SEG:seg	:	:

Description

AT5G55580 (E=2e-223) | mitochondrial transcription termination factor family protein / mTERF family protein

Coordinates

chrA03:-:5648350..5650375

Molecular Weight (calculated)

56794.5 Da

IEP (calculated)

9.387

GRAVY (calculated)

-0.486

Length

492 amino acids

Sequence
(BLAST)

001: MAGFSFSCFC FINPPILFTL PSESPLFLLG SGKDSPATRR RARKLVVSNA HSNPKIINPK KKSRYGQTLS PYDSDEEEEL DDESDDDDDD WLLNDDFAEV
101: TEYEKKKPKS QKTTIAKKGV KEAVKSWETD EDDLDNASDK KKKVEKDSWR LDGRGKVSTR KHVAKLYPRL SEEIDIDPKW VPLLDYLSTF GLKESHFVQM
201: YERHMPSLQI NVVSAQERLD YLLSVGVKHR DIKRMLLRQP QILQYTVENN LKAHISFLMG LGIPNSKIGQ IVAVTPSLFS YSVENSLRPT IRYLIEEVGI
301: NENDVGKVVQ LSPQILVQRL DITWNTRYMF LSKELGAPRD SVVKMVKRHP QILHYSIDDG FLPRINFLRS IGMCNSDILK VLTSLTQVLS LSLEDNLKPK
401: YMYLVNELKN EVHILTKYPM YLSLSLDQRI RPRHRFLVEL KKVRKGPFPL SSLVPNDESF CQQWAGTSVD KYLAFRQRLL LKDFANKYEK RG

Best Arabidopsis Sequence Match ( AT5G55580.1 )
(BLAST)

001: MAGFSLYCFK NPRILFTLPS ESPLFVLGSD KCSPATRRPS RKTRGFVVTY AHSNPKIINP KKKSRYGQTL SPYDSDEDDD DDDDDDDDDW LLNDDFAEVT
101: EYEKKKPKSH KQTIAKKSVK KGIVKPEESE TDEDDLDLGI SPNATSEKKK ESWRLDGRGK MSSRKYVEKL YPRLAEEIDI DPKCVPLLDY LSTFGLKESH
201: FVQMYERHMP SLQINVFSAQ ERLDYLLSVG VKHRDIKRML LRQPQILQYT VENNLKAHIS FLMGLGIPNS KIGQIVAATP SLFSYSVENS LRPTIRYLIE
301: EVGIKETDVG KVVQLSPQIL VQRLDITWNT RYMFLSKELG APRDSVVKMV KKHPQLLHYS IDDGFLPRIN FLRSIGMCNS DILKVLTSLT QVLSLSLEDN
401: LKPKYMYLVN ELNNEVHILT KYPMYLSLSL DQRIRPRHRF LVELKKVRKG PFPLSSLVPN DESFCQQWAG TSVDTYLAFR QRLLLKEFAN KYDKRG

Arabidopsis Description

MTERF9Transcription termination factor MTERF9, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FM80]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.