CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 5
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d006700_P003	Maize	mitochondrion, plastid	93.68	82.29
TraesCS2D01G198500.1	Wheat	plastid	74.11	79.62
TraesCS2B01G218100.1	Wheat	plastid	78.06	79.16
HORVU2Hr1G036490.17	Barley	mitochondrion	78.66	79.13
Os07t0583200-01	Rice	endoplasmic reticulum, plastid	78.46	78.93
TraesCS2A01G189200.1	Wheat	plastid	77.47	78.56
PGSC0003DMT400076662	Potato	cytosol	42.49	73.63
GSMUA_Achr3P29890_001	Banana	plastid	60.28	60.16
KRH73870	Soybean	plastid	55.53	57.35
KRH14270	Soybean	plastid	55.53	56.54
AT5G55580.1	Thale cress	plastid	52.96	54.03
CDY36755	Canola	nucleus, vacuole	52.57	53.96
Solyc12g015640.1.1	Tomato	plastid	51.38	53.94
Bra028970.1-P	Field mustard	plastid	52.17	53.66
CDY66686	Canola	extracellular, vacuole	51.78	53.14
VIT_19s0090g01770.t01	Wine grape	plastid	46.25	46.52
OQU90879	Sorghum	plastid	13.83	21.94
KXG39318	Sorghum	plastid	13.24	21.41
OQU85198	Sorghum	mitochondrion, plastid	10.67	19.35
EES14251	Sorghum	cytosol	12.06	18.26
OQU77962	Sorghum	plastid	16.4	16.67
KXG30576	Sorghum	cytosol	15.61	16.06
EES07645	Sorghum	mitochondrion	15.02	15.54
OQU89932	Sorghum	plastid	16.6	13.79
OQU88410	Sorghum	plastid	16.4	13.79

Protein Annotations

Gene3D:1.25.70.10	MapMan:15.6.2.2	EntrezGene:8058361	UniProt:C5XCG8	EnsemblPlants:EER97446	ProteinID:EER97446
ProteinID:EER97446.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003690	GO:GO:0003723
GO:GO:0003727	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006139	GO:GO:0006355	GO:GO:0006950	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0008380	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009628	GO:GO:0009651
GO:GO:0009658	GO:GO:0009987	GO:GO:0016043	GO:GO:0019843	GO:GO:0032502	GO:GO:0042255
GO:GO:0048364	GO:GO:0048367	InterPro:IPR038538	InterPro:MTERF	InterPro:MTERF_sf	PFAM:PF02536
PANTHER:PTHR13068	PANTHER:PTHR13068:SF13	SMART:SM00733	EnsemblPlantsGene:SORBI_3002G354600	unigene:Sbi.3629	UniParc:UPI0001A837BE
RefSeq:XP_002460925.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:71770912..71774603

Molecular Weight (calculated)

57734.1 Da

IEP (calculated)

9.004

GRAVY (calculated)

-0.499

Length

506 amino acids

Sequence
(BLAST)

001: MALQLQLPRP LAAARPSALL PSRDHGASAS ATALHARAGG VAFSLQTNVR LLKPNRRVRR SRDPYYDLDE DDEEEAEFDE EDDDEGYESD DDMSGLEYPG
101: VLYSNSPRAS SKRQELEPPL VKENWEGRQP KTRDNYGSPG KSKSLYPRSK VGRSSMDLKN MDSEVELKNA SISRSLFQKL QEDYDFDDKW LPLIDYLCTF
201: GLKESHFTYI YERHMACFQI SQASAEERLD FLLSAGVKSK DMKRILVRQP QILEYTLGNL KSHVDFLVSI GVPNTRIGQI ISAAPSMFSY SVEHSLKPTV
301: RYLIEEVGIE ESDVGKVVQL SPQILVQKID SAWKSRSLFL TKELGAPKDS IVKMVTKHPQ LLHYSIEDGI LPRINFLRSI GMRNTDILKV LTSLTQVLSL
401: SLEENLKPKY LYLVNELKNE VQSLTKYPMY LSLSLDQRIR PRHRFLVSLK KAPKGPFPLS SFVPTDERFC QRWAGTSLET YHTFRQRLLL TGFAEKSGRK
501: TLVSRR

Best Arabidopsis Sequence Match ( AT5G55580.2 )
(BLAST)

001: MILLRCGFVC EGVKKGIVKP EESETDEDDL DLGISPNATS EKKKESWRLD GRGKMSSRKY VEKLYPRLAE EIDIDPKCVP LLDYLSTFGL KESHFVQMYE
101: RHMPSLQINV FSAQERLDYL LSVGVKHRDI KRMLLRQPQI LQYTVENNLK AHISFLMGLG IPNSKIGQIV AATPSLFSYS VENSLRPTIR YLIEEVGIKE
201: TDVGKVVQLS PQILVQRLDI TWNTRYMFLS KELGAPRDSV VKMVKKHPQL LHYSIDDGFL PRINFLRSIG MCNSDILKVL TSLTQVLSLS LEDNLKPKYM
301: YLVNELNNEV HILTKYPMYL SLSLDQRIRP RHRFLVELKK VRKGPFPLSS LVPNDESFCQ QWAGTSVDTY LAFRQRLLLK EFANKYDKRG

Arabidopsis Description

MTERF9Transcription termination factor MTERF9, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FM80]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.