CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, mitochondrion

Predictor Summary:

plastid 3
mitochondrion 4
peroxisome 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d050886_P001	Maize	mitochondrion	92.47	92.47
Os02t0577501-00	Rice	plastid	77.42	76.6
TraesCS6D01G188800.1	Wheat	plastid	74.19	73.93
TraesCS6A01G201500.1	Wheat	extracellular, mitochondrion, plastid	73.84	73.57
TraesCS6B01G219200.1	Wheat	plastid	74.19	73.4
HORVU6Hr1G051070.1	Barley	cytosol, extracellular, plastid	73.48	73.21
OQU90879	Sorghum	plastid	21.15	18.5
KXG39318	Sorghum	plastid	20.43	18.21
EES14251	Sorghum	cytosol	14.7	12.28
OQU88410	Sorghum	plastid	25.45	11.79
KXG30576	Sorghum	cytosol	19.71	11.18
OQU77962	Sorghum	plastid	19.71	11.04
EES07645	Sorghum	mitochondrion	19.0	10.84
EER97446	Sorghum	mitochondrion	19.35	10.67
OQU89932	Sorghum	plastid	20.79	9.52

Protein Annotations

Gene3D:1.25.70.10	MapMan:15.6.2.2	EntrezGene:8070549	UniProt:A0A1Z5RNC4	GO:GO:0000003	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003690	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009658	GO:GO:0009790
GO:GO:0009791	GO:GO:0009793	GO:GO:0009987	GO:GO:0016043	InterPro:IPR038538	InterPro:MTERF
InterPro:MTERF_sf	EnsemblPlants:OQU85198	ProteinID:OQU85198	ProteinID:OQU85198.1	PFAM:PF02536	PANTHER:PTHR13068
PANTHER:PTHR13068:SF36	SMART:SM00733	EnsemblPlantsGene:SORBI_3004G190900	UniParc:UPI0001A85D48	RefSeq:XP_002454060.1	SEG:seg

Description

hypothetical protein

Coordinates

chr4:-:54292346..54293585

Molecular Weight (calculated)

30957.4 Da

IEP (calculated)

11.503

GRAVY (calculated)

0.055

Length

279 amino acids

Sequence
(BLAST)

001: MAMLGRARLP PVAPLPPIAT GAGGAGVEFR RKIRFLSSEL HLDPFPLLAI NPVLRSAPLP LLRDSLRLLT SHGLTARDAT RVFSAFPSLL TSPPEEPLRF
101: LSADAPLPPP LLRSAVVRSP RLLAASVPDT LRPALLFLRR RVMLRREPLP LAAALLLAFS VERTLLPKLL YLRDATGLPD SAVCAVLRRA PAILSYGIET
201: NLTPKLQFLA ERMRRDPAAE LAEFPHYFAF SLEGRIKPRH EALRQRGIEM PLKDMLTSND DDFRERLVNV TLSDTKARL

Best Arabidopsis Sequence Match ( AT2G03050.1 )
(BLAST)

001: MIARCSLFPP PCFSAVRIRC FAGETSDTGI LFREKLIYLQ DLNVDPHKAL RVNPSLRSAP ISSVVSVETL LSSTGLSRPA VGRILDMFPD LLTSDPESEI
101: LPVLRFLSNE ISISEQDIPK SISRCPRLLI SSVDYQLRPA LTFLKTLGFV GRDTITSRNT VLLVSNVERT LIPKIEYLEE GLGFTREEVA KMVVRSPALL
201: TYSVDNNLVP KVEFFIEEMR GDVKELKRFP QYFSFSLERK IKPRHRLLKE HGILMPLSEM LKVSDGQFNH WLLELRLRSA ERR

Arabidopsis Description

MTERF1SOLDAT10 [Source:UniProtKB/TrEMBL;Acc:A0A178VYV9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.