CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d011574_P001	Maize	cytosol, extracellular, plastid	39.5	82.35
Os03t0785200-01	Rice	plastid	77.43	79.68
TraesCS5A01G423600.1	Wheat	plastid	78.37	78.12
TraesCS5D01G432100.1	Wheat	plastid	79.0	77.06
TraesCS5B01G425900.1	Wheat	plastid	79.0	76.83
GSMUA_Achr6P31220_001	Banana	plastid	35.74	50.67
KRH12828	Soybean	plastid	47.96	50.66
AT2G34620.1	Thale cress	plastid	46.4	48.84
PGSC0003DMT400080487	Potato	plastid	47.34	48.71
Solyc02g021430.1.1	Tomato	plastid	46.71	48.69
KRH37793	Soybean	plastid	47.96	47.52
VIT_10s0003g04040.t01	Wine grape	plastid	51.41	46.59
CDX84297	Canola	plastid	46.71	45.15
KXG39318	Sorghum	plastid	28.21	28.75
OQU85198	Sorghum	mitochondrion, plastid	18.5	21.15
EES14251	Sorghum	cytosol	16.61	15.87
KXG30576	Sorghum	cytosol	21.94	14.23
EER97446	Sorghum	mitochondrion	21.94	13.83
EES07645	Sorghum	mitochondrion	21.0	13.7
OQU77962	Sorghum	plastid	20.06	12.85
OQU88410	Sorghum	plastid	22.88	12.13
OQU89932	Sorghum	plastid	21.0	11.0

Protein Annotations

Gene3D:1.25.70.10	MapMan:15.6.2.2	UniProt:A0A1Z5S4Y0	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003690	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006139	GO:GO:0006355	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009628	GO:GO:0009987	GO:GO:0042646
GO:GO:0071472	InterPro:IPR038538	InterPro:MTERF	InterPro:MTERF_sf	EnsemblPlants:OQU90879	ProteinID:OQU90879
ProteinID:OQU90879.1	PFAM:PF02536	PANTHER:PTHR13068	PANTHER:PTHR13068:SF78	SMART:SM00733	EnsemblPlantsGene:SORBI_3001G066600
UniParc:UPI000B8BA32D	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:5063876..5064850

Molecular Weight (calculated)

35078.6 Da

IEP (calculated)

8.118

GRAVY (calculated)

0.006

Length

319 amino acids

Sequence
(BLAST)

001: MPLCSFYAST SVPVVKPQQS VASSKPPSTA AASVTTTVPM RSATTATVTT AVPTASQTLS LHLPELPSQV KDKILSLELM GVDYRRALEL NPALRDAAPE
101: SIHAVSRGLQ FKDLGRVFGM CPSVLTASVR ADLRPVFAFL SEDLCIPESA HRRVVIKCPR VLACSVRDQL RPALIYLRRL GFRDSRALAL QDPILLVSSV
201: ERTLAPKLEY LAGLGMSRDD AVAMVLRCPA LFTFSIERNF RPKFEYLVDA MGGGVEDVKA FPQYFAFSLE KRIAPRHRAA EDAGVALPLP DMLKATDEEF
301: REMLDKEREL LQEQTATTD

Best Arabidopsis Sequence Match ( AT2G34620.1 )
(BLAST)

001: MSAALSSSLY ISPKKPSCPQ QSQSTFLSTK PTTIKTNLHS HPLFTVADQT VTLQMKEKIL CLELMGIDSG KALSLNPCLC SAPLDSIQSV LHFLQSKGIY
101: PNDLPRILGM CPKILTSDVR TELYPVFMFL SNDLHVPENA FRRVIKKCPR LLISSVEDQL KPALFYLQRL GLKDLEALAY QDPILLVSSV EHTLIPKLRF
201: LESIGFSRPE AIGMILRCPA LFTFSIENNF KPKLDYFMSE IKGKLENLKE FPQYFAFSLE KRIKPRHLES MERGLELPLS LMLKSTDEEF EQLLTNPSSV
301: ANV

Arabidopsis Description

Mitochondrial transcription termination factor family protein [Source:UniProtKB/TrEMBL;Acc:O64685]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.