Factsheet for GSMUA_Achr6P31220_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	plastid
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT2G34620.1	Thale cress	plastid	50.67	37.62
Solyc02g021430.1.1	Tomato	plastid	51.11	37.58
KRH12828	Soybean	plastid	50.22	37.42
Os03t0785200-01	Rice	plastid	51.11	37.1
PGSC0003DMT400080487	Potato	plastid	49.78	36.13
KRH37793	Soybean	plastid	51.56	36.02
OQU90879	Sorghum	plastid	50.67	35.74
CDX84297	Canola	plastid	51.11	34.85
TraesCS5A01G423600.1	Wheat	plastid	48.89	34.38
VIT_10s0003g04040.t01	Wine grape	plastid	53.33	34.09
TraesCS5D01G432100.1	Wheat	plastid	48.89	33.64
TraesCS5B01G425900.1	Wheat	plastid	48.89	33.54
GSMUA_Achr5P23270_001	Banana	mitochondrion	40.44	29.45
Zm00001d011574_P001	Maize	cytosol, extracellular, plastid	19.11	28.1
GSMUA_Achr6P02570_001	Banana	plastid	27.11	25.31
GSMUA_Achr2P08550_001	Banana	plastid	27.11	22.26
GSMUA_AchrUn_...	Banana	plastid	30.22	20.18
GSMUA_Achr10P...	Banana	mitochondrion	20.0	12.13
GSMUA_AchrUn_...	Banana	cytosol	16.89	11.48
GSMUA_Achr3P29890_001	Banana	plastid	24.89	11.05
GSMUA_Achr3P02690_001	Banana	plastid	24.89	10.81
GSMUA_Achr7P20690_001	Banana	cytosol	10.22	10.41
GSMUA_Achr4P23060_001	Banana	mitochondrion	25.78	8.31
GSMUA_Achr3P27780_001	Banana	plastid	20.44	7.54
GSMUA_Achr3P24870_001	Banana	cytosol, mitochondrion, plastid	10.22	5.9

Protein Annotations

Gene3D:1.25.70.10	MapMan:15.6.2.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003690
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139
GO:GO:0006355	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507
GO:GO:0009536	GO:GO:0009628	GO:GO:0009987	GO:GO:0042646	GO:GO:0071472	EnsemblPlantsGene:GSMUA_Achr6G31220_001
EnsemblPlants:GSMUA_Achr6P31220_001	EnsemblPlants:GSMUA_Achr6T31220_001	InterPro:IPR038538	UniProt:M0TBR7	InterPro:MTERF	InterPro:MTERF_sf
PFAM:PF02536	PANTHER:PTHR13068	PANTHER:PTHR13068:SF78	SMART:SM00733	SignalP:SignalP-noTM	UniParc:UPI0002966DC3
SEG:seg	:	:	:	:	:

Description

Putative mTERF domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G31220_001]

Coordinates

chr6:+:31081303..31082337

Molecular Weight (calculated)

24747.6 Da

IEP (calculated)

10.380

GRAVY (calculated)

-0.028

Length

225 amino acids

Sequence
(BLAST)

001: MPLLHSLCAS SSLILPTTTA AAAQLAAKPS VLSPAPSSSS KDFAVPIPGL PTHVKEKILS LEVMGVDAGR ALSLNPALRT ASLDSVHSVI AYLLSKGIHH
101: KDLGRILGMC PRILTSSLQY LVGLGMSREE AVGMVLRCPG LFTFSIDRNF KPKYEYLIGQ MGRSLQDLKD FPQYFAFSLE KRIKRRHQEL RHSGLTLPLS
201: TMLKSTDEEL KQLVEKKKKN TRIPI

Best Arabidopsis Sequence Match ( AT2G34620.1 )
(BLAST)

001: MSAALSSSLY ISPKKPSCPQ QSQSTFLSTK PTTIKTNLHS HPLFTVADQT VTLQMKEKIL CLELMGIDSG KALSLNPCLC SAPLDSIQSV LHFLQSKGIY
101: PNDLPRILGM CPKILTSDVR TELYPVFMFL SNDLHVPENA FRRVIKKCPR LLISSVEDQL KPALFYLQRL GLKDLEALAY QDPILLVSSV EHTLIPKLRF
201: LESIGFSRPE AIGMILRCPA LFTFSIENNF KPKLDYFMSE IKGKLENLKE FPQYFAFSLE KRIKPRHLES MERGLELPLS LMLKSTDEEF EQLLTNPSSV
301: ANV

Arabidopsis Description

Mitochondrial transcription termination factor family protein [Source:UniProtKB/TrEMBL;Acc:O64685]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.