Factsheet for Solyc12g015640.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400076662	Potato	cytosol	60.37	99.66
KRH73870	Soybean	plastid	60.58	59.59
KRH14270	Soybean	plastid	61.0	59.15
Bra028970.1-P	Field mustard	plastid	58.71	57.52
CDY36755	Canola	nucleus, vacuole	58.71	57.4
CDY66686	Canola	extracellular, vacuole	58.71	57.4
AT5G55580.1	Thale cress	plastid	58.51	56.85
GSMUA_Achr3P29890_001	Banana	plastid	59.54	56.61
TraesCS2D01G198500.1	Wheat	plastid	51.04	52.23
EER97446	Sorghum	mitochondrion	53.94	51.38
TraesCS2B01G218100.1	Wheat	plastid	53.11	51.3
VIT_19s0090g01770.t01	Wine grape	plastid	53.53	51.29
TraesCS2A01G189200.1	Wheat	plastid	52.7	50.9
HORVU2Hr1G036490.17	Barley	mitochondrion	52.9	50.7
Os07t0583200-01	Rice	endoplasmic reticulum, plastid	52.9	50.7
Zm00001d006700_P003	Maize	mitochondrion, plastid	53.53	44.79
Solyc02g021430.1.1	Tomato	plastid	14.52	22.88
Solyc01g007750.2.1	Tomato	plastid	14.94	22.71
Solyc05g007840.2.1	Tomato	plastid	14.73	21.65
Solyc01g109550.2.1	Tomato	mitochondrion	13.07	21.43
Solyc11g044360.1.1	Tomato	cytosol	13.9	21.14
Solyc02g093940.2.1	Tomato	nucleus	15.98	15.91
Solyc11g017050.1.1	Tomato	extracellular	15.56	15.06
Solyc03g081300.2.1	Tomato	plastid	14.52	14.23
Solyc04g005630.2.1	Tomato	nucleus	14.94	13.33
Solyc03g124040.2.1	Tomato	golgi, plastid	15.35	12.89
Solyc01g109630.2.1	Tomato	mitochondrion	17.43	11.91

Protein Annotations

Gene3D:1.25.70.10	MapMan:15.6.2.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003690
GO:GO:0003723	GO:GO:0003727	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006139	GO:GO:0006355	GO:GO:0006950	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0008380	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009628
GO:GO:0009651	GO:GO:0009658	GO:GO:0009987	GO:GO:0016043	GO:GO:0019843	GO:GO:0032502
GO:GO:0042255	GO:GO:0048364	GO:GO:0048367	InterPro:IPR038538	UniProt:K4DD00	InterPro:MTERF
InterPro:MTERF_sf	PFAM:PF02536	PANTHER:PTHR13068	PANTHER:PTHR13068:SF13	SMART:SM00733	EnsemblPlantsGene:Solyc12g015640.1
EnsemblPlants:Solyc12g015640.1.1	UniParc:UPI000276A970	SEG:seg	:	:	:

Description

Transcription termination factor MTERF9, chloroplastic [Source:Projected from Arabidopsis thaliana (AT5G55580) UniProtKB/Swiss-Prot;Acc:Q9FM80]

Coordinates

chr12:+:5642779..5645448

Molecular Weight (calculated)

56025.0 Da

IEP (calculated)

9.528

GRAVY (calculated)

-0.494

Length

482 amino acids

Sequence
(BLAST)

001: MAAALSIICN FTLHYHTSIF FNINFPPSNR ISNRKSCFFK FSRICVVSSH TNPKILKPNR RSRFGQPLST YDSDSDDDDC FEDEDDISTS DDESLDVRVS
101: AQDRQRLKFQ NATHIRRDSH HHSEGGSNAK LGHRRQTPEI TQDCREKEAR VSLAKDRFSH LAEELDLDER WYPLLDYLST FGFKDSHFIQ MYERHMPSLQ
201: INKSSAQERL EFLLSVGVKH KDIRKIILRQ PQLLEYTVEN NLKSHVTFLT SLGIPDSRIG QIITATPSLF SYSVENSLKP TVTYLLEEVG IEKNDLAKVV
301: QLSPQILVQR INTSWTARFN FLTRELDAPR DSIVKMVRKH PQLLHYSIED GLLPRINFFR SIGMRNSEIV KVLTSITQVF SLSLEGNLKP KYSYLVNELG
401: NEVRSLTKYP MYLSLSLDQR IRPRHMFLVS LKRAPKGPFP LSSLVPTDES FCQQWARTSV DKYLDFRQRL LLKELARKYE RR

Best Arabidopsis Sequence Match ( AT5G55580.1 )
(BLAST)

001: MAGFSLYCFK NPRILFTLPS ESPLFVLGSD KCSPATRRPS RKTRGFVVTY AHSNPKIINP KKKSRYGQTL SPYDSDEDDD DDDDDDDDDW LLNDDFAEVT
101: EYEKKKPKSH KQTIAKKSVK KGIVKPEESE TDEDDLDLGI SPNATSEKKK ESWRLDGRGK MSSRKYVEKL YPRLAEEIDI DPKCVPLLDY LSTFGLKESH
201: FVQMYERHMP SLQINVFSAQ ERLDYLLSVG VKHRDIKRML LRQPQILQYT VENNLKAHIS FLMGLGIPNS KIGQIVAATP SLFSYSVENS LRPTIRYLIE
301: EVGIKETDVG KVVQLSPQIL VQRLDITWNT RYMFLSKELG APRDSVVKMV KKHPQLLHYS IDDGFLPRIN FLRSIGMCNS DILKVLTSLT QVLSLSLEDN
401: LKPKYMYLVN ELNNEVHILT KYPMYLSLSL DQRIRPRHRF LVELKKVRKG PFPLSSLVPN DESFCQQWAG TSVDTYLAFR QRLLLKEFAN KYDKRG

Arabidopsis Description

MTERF9Transcription termination factor MTERF9, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FM80]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.