Factsheet for Solyc03g081300.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
peroxisome 1
mitochondrion 1
cytosol 1
nucleus 1
golgi 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400001588	Potato	plastid	96.54	91.7
AT5G54180.1	Thale cress	plastid	49.59	48.8
Bra003005.1-P	Field mustard	plastid	48.58	47.9
CDY14326	Canola	plastid	48.58	47.9
CDY18308	Canola	plastid	48.37	47.7
KRH64303	Soybean	nucleus	44.31	43.78
Solyc11g044360.1.1	Tomato	cytosol	12.8	19.87
Solyc05g007840.2.1	Tomato	plastid	12.6	18.9
Solyc01g109550.2.1	Tomato	mitochondrion	10.98	18.37
Solyc01g007750.2.1	Tomato	plastid	11.79	18.3
Solyc02g021430.1.1	Tomato	plastid	10.77	17.32
Solyc02g093940.2.1	Tomato	nucleus	15.85	16.12
Solyc11g017050.1.1	Tomato	extracellular	15.04	14.86
Solyc12g015640.1.1	Tomato	plastid	14.23	14.52
Solyc04g005630.2.1	Tomato	nucleus	15.04	13.7
VIT_16s0098g00970.t01	Wine grape	plastid	55.28	13.48
Solyc03g124040.2.1	Tomato	golgi, plastid	15.24	13.07
Solyc01g109630.2.1	Tomato	mitochondrion	15.65	10.92

Protein Annotations

Gene3D:1.25.70.10	MapMan:15.6.1.2.3.5	MapMan:15.6.2.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003690	GO:GO:0003723	GO:GO:0003727	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0008380	GO:GO:0009058	GO:GO:0009295	GO:GO:0009507	GO:GO:0009508	GO:GO:0009536
GO:GO:0009658	GO:GO:0009987	GO:GO:0016043	GO:GO:0019843	GO:GO:0032502	GO:GO:0042255
InterPro:IPR038538	UniProt:K4BI06	InterPro:MTERF	InterPro:MTERF_sf	PFAM:PF02536	PANTHER:PTHR13068
PANTHER:PTHR13068:SF32	SMART:SM00733	EnsemblPlantsGene:Solyc03g081300.2	EnsemblPlants:Solyc03g081300.2.1	UniParc:UPI0002768372	:

Description

Transcription termination factor MTERF8, chloroplastic [Source:Projected from Arabidopsis thaliana (AT5G54180) UniProtKB/Swiss-Prot;Acc:Q9FK23]

Coordinates

chr3:-:52181006..52182954

Molecular Weight (calculated)

55397.6 Da

IEP (calculated)

7.623

GRAVY (calculated)

-0.032

Length

492 amino acids

Sequence
(BLAST)

001: MSTPTKSFRL SPSPSCLFPP IRTLFPSALL PCQKLAFYPQ KQDKLPLHFL VPQDSTLLLL KCNALAINDS STNSFVDSGV MLFSLFREIG FNETDTEALL
101: DAHPVISLTP FESIRTRIHS LQSLGVSGLA LSRLIVKRPD VLTAVEIDGL VSFLIEGDLE LAGKIKSSQI EHLFNSTEPR FLEGFETKVR LLLEFGITQD
201: TIVHVLNNAN LTKAFCLKSF EDIERMLTFL NRFGGGDLIL RRPALLNYDL DAQLIPRVGF LLELSGGDET GTATVLRKLP FVVAYSVDHL KDHVEFLKSY
301: AGLSEEEIFR IVLVYPNMFS ASRKRKLHPR IDFLKQCGLS SHDIFRFLIK IGYKKNTKEL AMAMGAVTRT SCKNMQEVIG VFLNYGLTFD DILEMSMKHP
401: QVLQYNHESL EEKMDYLVEE MGREVGELLA FPAFLGYKLD GRIKHRYEEK RKILGEGMSL NKLLSVSAAR FSTKSKRKGR VPAVSGLDES DD

Best Arabidopsis Sequence Match ( AT5G54180.1 )
(BLAST)

001: MVILSLVSCS FSVFSPPISL RLHLPPVTSL CSHGTFPASS TFRSQLQPLL ISCLNHREPA LTFRCSCLSS PIESGSQIES LFSLFRDIGF IEEETEMILA
101: KNPDIKSTSL DKIGARVASL QSLKINGFPL QGLIAKCPNL LTSEEFDLVI SFLVDELEGR LDPELVERLL SVVDTSILLS FNQKVRLLLL HGIPKEKISH
201: VLNKVYLNKL LYQKSVEDIE RLISFLEPFG GIGIIARRPV ILNSDLDSQL IPRVDFIRNL SGEDDFATGT VLRRLPAILS YSVEHMNGQV EFLKSFAGLT
301: SEQVFKIVHV FPNVISTSKE RKLRPRIEFL KECGFDSPGM FKFLSKAPLI LALSENNLSH KLGFLVKIGY KHRTKELAFA MGAVTRTSSD NMQRVIGLYL
401: SYGLSFEDIL AMSTKHPQVL QYNYTSLEEK LEYLIEYMGR EVEELLAFPA FLGYKLDSRI KHRYEEKLKS RGENMSLNKL LTVSAERFSK AADNIEMICL

Arabidopsis Description

MTERF8PTAC15 [Source:UniProtKB/TrEMBL;Acc:A0A178U8Y7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.