CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 7
mitochondrion 3
plasma membrane 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra003005.1-P	Field mustard	plastid	46.79	46.69
CDY14326	Canola	plastid	46.79	46.69
AT5G54180.1	Thale cress	plastid	46.79	46.6
CDY18308	Canola	plastid	46.18	46.09
PGSC0003DMT400001588	Potato	plastid	46.59	44.79
Solyc03g081300.2.1	Tomato	plastid	43.78	44.31
KRH40190	Soybean	cytosol	6.63	30.0
KRH32500	Soybean	cytosol	16.27	24.18
KRH19886	Soybean	cytosol	15.86	23.58
KRH74890	Soybean	cytosol, plasma membrane, plastid	12.45	23.4
KRH12828	Soybean	plastid	13.65	22.52
KRH01028	Soybean	plastid	12.25	22.26
KRH70749	Soybean	plastid	12.85	21.69
KRH43735	Soybean	plastid	14.26	21.01
KRH13722	Soybean	plastid	14.26	20.88
KRH37793	Soybean	plastid	12.85	19.88
KRH39012	Soybean	cytosol	15.26	17.0
KRG94311	Soybean	plastid	16.06	16.91
KRH57654	Soybean	mitochondrion, plastid	16.06	16.67
KRH73870	Soybean	plastid	15.86	16.12
KRH14270	Soybean	plastid	15.26	15.29
KRH72610	Soybean	plastid	15.46	14.86
KRH60420	Soybean	cytosol	12.05	14.71
KRH41721	Soybean	mitochondrion	14.66	14.63
KRH24469	Soybean	plastid	16.87	13.46
KRH09594	Soybean	cytosol	15.26	12.84
VIT_16s0098g00970.t01	Wine grape	plastid	48.8	12.04
KRH29455	Soybean	mitochondrion	13.05	11.44

Protein Annotations

Gene3D:1.25.70.10	MapMan:15.6.1.2.3.5	MapMan:15.6.2.2	EMBL:ACUP02002753	EnsemblPlantsGene:GLYMA_04G228500	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003690	GO:GO:0003723	GO:GO:0003727	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0008380	GO:GO:0009058	GO:GO:0009295	GO:GO:0009507
GO:GO:0009508	GO:GO:0009536	GO:GO:0009658	GO:GO:0009987	GO:GO:0016043	GO:GO:0019843
GO:GO:0032502	GO:GO:0042255	InterPro:IPR038538	UniProt:K7KLT0	EnsemblPlants:KRH64303	ProteinID:KRH64303
ProteinID:KRH64303.1	InterPro:MTERF	InterPro:MTERF_sf	PFAM:PF02536	PANTHER:PTHR13068	PANTHER:PTHR13068:SF32
SMART:SM00733	UniParc:UPI000233A1E9	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:49771171..49773418

Molecular Weight (calculated)

56876.7 Da

IEP (calculated)

9.320

GRAVY (calculated)

-0.049

Length

498 amino acids

Sequence
(BLAST)

001: MVLALALSAN RSCLCSSTTF HPHPLLNPSP SLHFSPSTFH PQPLCSLIKQ HIIPQPSHKA SIHRRRCSNS LATADAQFAS IIALFQDIGI GFEETQVLLC
101: NNHDLASVPI DSLHVRFLSL RSLGFDPLTL CKLVTKRPTI LTANEIDPLL TFLRDNLQGK LEKQQLNRLL SSTEQEFLES FPQKVQFLVD RGIPVDQVVH
201: VLNKVNLSKV LCRRSLEEID RTISFLEPFG GIALILKRPQ ILNHDLDTQI VPRVKFLMEL SDGDEDSVGK VLLRFPIFLN YSVAHVEEHV GFLSSFAEFD
301: YKQIFRIIQV YPAIVTTSRE RKLRPRIQFL KECGLDSDEI FKFLIKGPTF LSISFNENIA YKLVLLVKIG YRYRSKDLAM AIRSATRTNC GNMQKVISLF
401: LNYGFSCEDI VAMSKKQPQI LQYNHTSLEK KMEYLIEEMG RDIEELLLFP AFLGYKLDDR IKHRFEVKKL VRGRGMSINK LLTVSEETFA GKRKKVMP

Best Arabidopsis Sequence Match ( AT5G54180.1 )
(BLAST)

001: MVILSLVSCS FSVFSPPISL RLHLPPVTSL CSHGTFPASS TFRSQLQPLL ISCLNHREPA LTFRCSCLSS PIESGSQIES LFSLFRDIGF IEEETEMILA
101: KNPDIKSTSL DKIGARVASL QSLKINGFPL QGLIAKCPNL LTSEEFDLVI SFLVDELEGR LDPELVERLL SVVDTSILLS FNQKVRLLLL HGIPKEKISH
201: VLNKVYLNKL LYQKSVEDIE RLISFLEPFG GIGIIARRPV ILNSDLDSQL IPRVDFIRNL SGEDDFATGT VLRRLPAILS YSVEHMNGQV EFLKSFAGLT
301: SEQVFKIVHV FPNVISTSKE RKLRPRIEFL KECGFDSPGM FKFLSKAPLI LALSENNLSH KLGFLVKIGY KHRTKELAFA MGAVTRTSSD NMQRVIGLYL
401: SYGLSFEDIL AMSTKHPQVL QYNYTSLEEK LEYLIEYMGR EVEELLAFPA FLGYKLDSRI KHRYEEKLKS RGENMSLNKL LTVSAERFSK AADNIEMICL

Arabidopsis Description

MTERF8PTAC15 [Source:UniProtKB/TrEMBL;Acc:A0A178U8Y7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.