CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_09s0054g01030.t01	Wine grape	plastid	52.7	51.91
AT1G78930.1	Thale cress	plastid	46.79	46.87
PGSC0003DMT400023772	Potato	plastid	46.11	45.73
Solyc03g124040.2.1	Tomato	golgi, plastid	44.26	45.64
GSMUA_Achr3P27780_001	Banana	plastid	45.78	44.43
HORVU5Hr1G089290.3	Barley	cytosol	38.68	42.72
Os09t0560100-00	Rice	plasma membrane, plastid	41.55	40.2
TraesCS5D01G372800.1	Wheat	plastid	39.53	40.0
OQU89932	Sorghum	plastid	41.05	39.9
TraesCS5B01G365700.1	Wheat	plastid	39.19	39.66
Zm00001d027230_P001	Maize	plastid	40.54	39.15
TraesCS5A01G363600.1	Wheat	plastid	35.98	37.24
Zm00001d021376_P001	Maize	cytosol	40.37	37.23
HORVU0Hr1G013680.1	Barley	mitochondrion	13.68	34.91
KRH40190	Soybean	cytosol	5.57	30.0
KRH19886	Soybean	cytosol	15.54	27.46
KRH32500	Soybean	cytosol	15.37	27.16
KRH74890	Soybean	cytosol, plasma membrane, plastid	11.49	25.66
KRH01028	Soybean	plastid	11.49	24.82
KRH70749	Soybean	plastid	11.99	24.07
KRH12828	Soybean	plastid	12.16	23.84
KRH37793	Soybean	plastid	11.99	22.05
KRH43735	Soybean	plastid	11.15	19.53
KRG94311	Soybean	plastid	15.54	19.45
KRH13722	Soybean	plastid	10.98	19.12
KRH39012	Soybean	cytosol	14.36	19.02
KRH57654	Soybean	mitochondrion, plastid	15.37	18.96
KRH60420	Soybean	cytosol	13.01	18.87
KRH41721	Soybean	mitochondrion	15.37	18.24
KRH72610	Soybean	plastid	15.37	17.57
KRH73870	Soybean	plastid	14.19	17.14
KRH14270	Soybean	plastid	14.36	17.1
KRH24469	Soybean	plastid	17.91	16.99
KRH29455	Soybean	mitochondrion	14.86	15.49
KRH64303	Soybean	nucleus	12.84	15.26

Protein Annotations

Gene3D:1.25.70.10	EntrezGene:100802127	MapMan:15.6.2.2	EMBL:ACUP02009103	EnsemblPlantsGene:GLYMA_15G000800	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003690	GO:GO:0003723	GO:GO:0003727	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0008380	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536
GO:GO:0009658	GO:GO:0009987	GO:GO:0016043	GO:GO:0019843	GO:GO:0032502	GO:GO:0042255
UniProt:I1MC78	InterPro:IPR038538	EnsemblPlants:KRH09594	ProteinID:KRH09594	ProteinID:KRH09594.1	InterPro:MTERF
InterPro:MTERF_sf	PFAM:PF02536	PANTHER:PTHR13068	PANTHER:PTHR13068:SF42	SMART:SM00733	UniParc:UPI000233C15B

Description

hypothetical protein

Coordinates

chr15:+:76253..80253

Molecular Weight (calculated)

67862.4 Da

IEP (calculated)

9.831

GRAVY (calculated)

-0.081

Length

592 amino acids

Sequence
(BLAST)

001: MEGDGCNVKM LVKIHTNWFA PFAFPVRLAH KIEGCFELSK YVLFTRPPIS SSFEVDNDKA RKRRSSWRCG CGSEEARRAV SSYLGELGVS EEDSVWISSK
101: SPEYVKMLVE GVRDLEQWQI ALAGLSFKDK IIHIAAQKGD KGKVAYLESL GFTLSSSMNI ARYLPSDTHT LPSLMHKVTR IKQLLFFSPT PDHHLLIKSI
201: RLMMRHLSIS IDEDLQHTLS FFEKLQAKPG GLGILAYKNA AFRSLIESFP RLLQLSVDNH FTPILHFLHN FGIPTFRISN IILAFPPLLF WDLQLLQTRL
301: LVFKEIDLPD KDYAKLLLKY PWLLSTSIQE NYTELLAFSY SIKVPKTQID RAIESHPHLL SCSTSKLKSM VDQFAELGVR NKKLNQVIAK SPQLLLRKPK
401: DFLQIVLLFE NMGFDKETIG RILARCPEIF AASINKTLQR KIEFLGRVGV SKTFLPGVIR KYPELLVSDI DKTLLQRIMY LMKLGLSEKD IAYMVRTFSP
501: LLGYSIEGVL RPKIEFLVNS MERPVRDVVD YPRYFSYSLE KKIKPRYWVL KGRDIKCSLK DMLGKNDEEF AAEFMGIGRM LVYPPVSSND SQ

Best Arabidopsis Sequence Match ( AT1G78930.1 )
(BLAST)

001: MELLHTSCNF ETLTLISPPL KSCNFSSSSL FFSPRRVTLF PAYHSGRVTV SASLQHGDSN FSSNSSQTNQ EAQNSIAGFL RRDTGLSEAD SDFISSNCPK
101: YTRMIVEGVR DLEEWNSWKG SGESERVEEG LGFKEKVIYM VKQKGDGGKV AFLESLGLSL SSAMYLAHYV SSESLPILLD KVKYLKEIFF SGSDEKGLVG
201: KYARRMMLYL SIPIDEDVQQ TLSFFEKIEA RRGGLDMLGS VDASFRFLLE SFPRLLLLSE ENDMKPMVEF LESIGIPKYC LGKVLLLYPP IMLGKTEEIK
301: RRVATAMEKV SVVNKDSGKL LLKYPWILSP SIQENYSHIG SFFYSESVLK MDIDHAIRRW PLLLGCSASN MEMMVKEFDK LGVRDKRMGK VIPKMPQLLL
401: CKPQEFLKVV CFLEDLGFQK EIVGQILCRC PEIFGCSIEK TLQKKLIFLT RFGVSTTHFP RIIKKYPEFL IYDADKTVLP RLKYLMEIGI SEREIAFMIR
501: KFSPILGYSI DKVLRPKFEF LVNSMEKPVR EVIEYPRYFS YSLEKRIKPR FRVLKGRNIE CTLQEMLGKN DEEFAADFLG LGELQTHSEI S

Arabidopsis Description

Mitochondrial transcription termination factor family protein [Source:UniProtKB/TrEMBL;Acc:Q0WRV2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.