Factsheet for Zm00001d047442_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 1
mitochondrion 3
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

plastid: 22065420
plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d029242_P001	Maize	plastid	86.91	85.48
KXG39318	Sorghum	plastid	87.92	83.71
Os03t0360600-00	Rice	cytosol, mitochondrion	76.51	75.75
TraesCS4D01G156100.1	Wheat	mitochondrion	74.16	70.38
TraesCS4B01G156500.1	Wheat	mitochondrion	73.49	69.75
TraesCS1A01G084300.1	Wheat	mitochondrion	72.82	69.11
HORVU4Hr1G045210.1	Barley	plastid	72.15	63.42
PGSC0003DMT400075363	Potato	cytosol	30.54	43.75
GSMUA_AchrUn_...	Banana	plastid	41.95	37.09
AT2G36000.1	Thale cress	plastid	38.93	34.83
Bra017269.1-P	Field mustard	plastid	38.59	34.74
VIT_08s0007g02500.t01	Wine grape	plastid	37.25	32.84
KRH43735	Soybean	plastid	36.58	32.25
PGSC0003DMT400085903	Potato	plastid	34.56	32.19
KRH13722	Soybean	plastid	36.58	32.06
Solyc01g007750.2.1	Tomato	plastid	32.89	30.91
Zm00001d011574_P001	Maize	cytosol, extracellular, plastid	11.74	22.88
Zm00001d050886_P001	Maize	mitochondrion	18.79	20.07
Zm00001d049743_P001	Maize	cytosol, mitochondrion, nucleus	16.78	14.97
Zm00001d017130_P001	Maize	plastid	24.16	14.81
Zm00001d010340_P001	Maize	plastid	22.15	13.36
Zm00001d052081_P003	Maize	mitochondrion	20.13	12.27
Zm00001d018756_P001	Maize	plastid	23.49	11.44
Zm00001d006700_P003	Maize	mitochondrion, plastid	21.14	10.94
Zm00001d027230_P001	Maize	plastid	21.81	10.6
Zm00001d021376_P001	Maize	cytosol	21.81	10.12

Protein Annotations

Gene3D:1.25.70.10	MapMan:15.6.2.2	UniProt:A0A1D6P9I1	ProteinID:AQL06451.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003690	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR038538	InterPro:MTERF	InterPro:MTERF_sf
PFAM:PF02536	PANTHER:PTHR13068	PANTHER:PTHR13068:SF47	SMART:SM00733	UniParc:UPI00084550B1	EnsemblPlantsGene:Zm00001d047442
EnsemblPlants:Zm00001d047442_P001	EnsemblPlants:Zm00001d047442_T001	SEG:seg	:	:	:

Description

mTERF-domain protein30Putative mitochondrial transcription termination factor family protein

Coordinates

chr9:-:130336965..130337861

Molecular Weight (calculated)

32136.4 Da

IEP (calculated)

10.070

GRAVY (calculated)

0.078

Length

298 amino acids

Sequence
(BLAST)

001: MSGTRTALAH EGLDYGPRLV APRRSRLSVV AVAVRTRPAS LAVPGLPPPT PEPVLPSPPV AAGVAAVLLE AGVPPADLRR AAGMCPELLS VPAEAVAAAL
101: RFLTEEAGVP EAELQRVLRR RPRLLVCPVA ARLRPTLYFL RALGVPDLHR RADLLSFSVE DKLLPRIEFL ESLGLPARAA RSMARRFPAL FGYGVDGNMR
201: PKAEYLLGVG AMGRRADELY EFPEYFSYAL AARIVPRHEA CAASGVAMPL PAMLRPGEAK FRATLDSCVG STLPRRRSAL WHATWVDDDA TAAKETMV

Best Arabidopsis Sequence Match ( AT2G36000.1 )
(BLAST)

001: MQQEALSFLS SSLPSLHHNF PSLSRLRFNN FPALSFKPNT SSSSSSFFKS PDIPSLSSTT TTTTTTETLE SSIHEKLIYL DSLGIDFLTL INRHPPLLST
101: ALSAVESVVD YMTTPPINFT LQDFRRLVSM CPELLTSPLT SHTIPVITFL LREVGVDSIF DLRQALRRRP RLLACSVDHQ LRPTLYFLQR IGILDPHKHT
201: YLLSCSVDNK LVPRIDYFEK LGFSRRSATA MFKRFPQLFN YSIAENYEPK LKYLMVEMGR DVREVLEFPQ YFSFSLENRI KPRHEACAAK GVRFPLPVML
301: KTNEAGFRDT LEVCCDSSPP LKTSRLVTVQ KDS

Arabidopsis Description

At2g36000/F11F19.9 [Source:UniProtKB/TrEMBL;Acc:Q9SJ50]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.