Factsheet for Zm00001d017130_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
peroxisome 2
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 22065420
plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG30576	Sorghum	cytosol	90.95	89.84
TraesCS6D01G196900.1	Wheat	plastid	79.01	79.18
TraesCS6B01G244200.1	Wheat	plastid	78.81	79.13
TraesCS6A01G214200.1	Wheat	plastid	78.4	78.72
HORVU6Hr1G054650.2	Barley	plastid	77.57	77.57
GSMUA_Achr3P02690_001	Banana	plastid	56.17	52.7
KRH39012	Soybean	cytosol	48.35	52.57
KRH57654	Soybean	mitochondrion, plastid	51.03	51.67
Solyc02g093940.2.1	Tomato	nucleus	51.23	51.45
KRG94311	Soybean	plastid	49.59	50.95
PGSC0003DMT400052092	Potato	mitochondrion	50.62	50.83
VIT_14s0171g00230.t01	Wine grape	plastid	50.62	49.7
AT4G14605.2	Thale cress	cytosol	49.18	48.48
CDY16267	Canola	cytosol	47.94	48.04
CDY29749	Canola	cytosol	48.15	47.76
Bra036876.1-P	Field mustard	cytosol	48.35	47.67
Zm00001d049743_P001	Maize	cytosol, mitochondrion, nucleus	20.37	29.64
Zm00001d029242_P001	Maize	plastid	15.84	25.41
Zm00001d047442_P001	Maize	plastid	14.81	24.16
Zm00001d052081_P003	Maize	mitochondrion	20.37	20.25
Zm00001d050886_P001	Maize	mitochondrion	11.52	20.07
Zm00001d011574_P001	Maize	cytosol, extracellular, plastid	6.17	19.61
Zm00001d010340_P001	Maize	plastid	17.49	17.21
Zm00001d027230_P001	Maize	plastid	19.75	15.66
Zm00001d021376_P001	Maize	cytosol	20.58	15.58
Zm00001d006700_P003	Maize	mitochondrion, plastid	17.28	14.58
Zm00001d018756_P001	Maize	plastid	17.28	13.73

Protein Annotations

Gene3D:1.25.70.10	MapMan:15.6.2.2	ProteinID:AQK72407.1	UniProt:B4FY60	EMBL:BT042048	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003690	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355
GO:GO:0006950	GO:GO:0006970	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009628
GO:GO:0009651	GO:GO:0009658	GO:GO:0009719	GO:GO:0009737	GO:GO:0009987	GO:GO:0016043
InterPro:IPR038538	EMBL:KJ727831	InterPro:MTERF	InterPro:MTERF_sf	PFAM:PF02536	PANTHER:PTHR13068
PANTHER:PTHR13068:SF9	SMART:SM00733	UniParc:UPI00017B7723	EnsemblPlantsGene:Zm00001d017130	EnsemblPlants:Zm00001d017130_P001	EnsemblPlants:Zm00001d017130_T001
SEG:seg	:	:	:	:	:

Description

mTERF domain protein17Transcription termination factor MTERF5 chloroplastic

Coordinates

chr5:+:186476548..186479279

Molecular Weight (calculated)

54328.2 Da

IEP (calculated)

9.448

GRAVY (calculated)

-0.091

Length

486 amino acids

Sequence
(BLAST)

001: MACLEAPPRV ELCPVSCQPR GLQLPPWRLS LSRSSSSCRS CTLVSRQLPI CNAQSYADDL WVAAPHSPAS VRSRLLAAER EEAKAVLSLF LRQKGLRSTL
101: AARIVNKSDG FIEHLVSKLQ IAYRSRYAEG RELSTPEIRD ALLPYLEALS KEHGDSLVEV VENFPDPFAM EREALSSSMA FTPTSSNKQK AIARISTAAS
201: GAALPELVPY LLDLGMDHEE IKDIVRKFPA FAYYSVDRKI KPLVELLLEL GVKNSSIPGI IKKRPQLCGI SMSDNLKPMM AYLESIGVDK AQWSKVITRF
301: PALLTYSRNK VQTTVSFLAE LGVSEKSIGK ILTRCPHIMS YSVDDNLRPT AAYFRSIGAD AASLIQKSPQ AFGLNVEAKL RPTTEFFLAR GFSVEEVGVM
401: ANRFGIVHTL SLEENLLPKY EFFLAMEYPR CELVKFPQYF GYSLDRRIKP RYARMTGCGV RLILNQMLSV SDARFEKILE KKTARL

Best Arabidopsis Sequence Match ( AT4G14605.2 )
(BLAST)

001: MQSLSQLGPS EIFLVARREK PSTRAQLWFT GRLSFRQETN GIRLKNRVEF SPRPVPPNLI AAEKEEAKAV LTLFFKKQGL SNSLSSRLIN KSDLFIDHLV
101: SRLHSVHKAR YLVGRELTTL EIRDSLIPYL EQLHEEHGDL LAELVVSFPD PPAEPRLVAS SPVSVLPPRG DTDSAADTRK LRAVSRVSEL DTEGALRPQT
201: LYLLDLGLNL EQIKTITRKF AAFPYYSLDG KIKPVVEFLL DLGIPKSDIP TILCKRPQIC GISLTDNLKP TMAFLETLGI DKNQWAKIIS RFPAILTYSR
301: QKLTSTVEFL SQTGLTEEQI GRILTRCPNI MSYSVEDKLR PTMEYFRSLN VDVAVLLHRC PQTFGLSIES NLKPVTEFFL EKGFGLDEIG IMISRYGALY
401: TFSLKENVMP KWDYFQTMDY PKSELVKFPQ FFGYSLQERI KPRYELVQRS GVRLLLNQVL SLSGIEFEKV VKKKMMKLVS NNVIAEQSSG GLL

Arabidopsis Description

MTERF5Transcription termination factor MTERF5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4JVI3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.