Factsheet for TraesCS6D01G196900.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

mitochondrion 3
nucleus 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, nucleus, plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G244200.1	Wheat	plastid	99.59	99.79
TraesCS6A01G214200.1	Wheat	plastid	99.18	99.38
HORVU6Hr1G054650.2	Barley	plastid	97.32	97.12
KXG30576	Sorghum	cytosol	82.47	81.3
Zm00001d017130_P001	Maize	plastid	79.18	79.01
KRH39012	Soybean	cytosol	48.87	53.02
GSMUA_Achr3P02690_001	Banana	plastid	56.49	52.9
KRH57654	Soybean	mitochondrion, plastid	51.55	52.08
Solyc02g093940.2.1	Tomato	nucleus	51.75	51.86
PGSC0003DMT400052092	Potato	mitochondrion	51.13	51.24
KRG94311	Soybean	plastid	49.9	51.16
VIT_14s0171g00230.t01	Wine grape	plastid	51.96	50.91
CDY29749	Canola	cytosol	49.9	49.39
Bra036876.1-P	Field mustard	cytosol	50.1	49.29
CDY16267	Canola	cytosol	49.07	49.07
AT4G14605.2	Thale cress	cytosol	49.69	48.88
TraesCS7D01G248600.1	Wheat	cytosol	17.32	27.01
TraesCS4D01G156100.1	Wheat	mitochondrion	15.26	23.57
TraesCS5D01G432100.1	Wheat	plastid	15.05	22.32
TraesCS6D01G188800.1	Wheat	plastid	11.96	20.71
TraesCS6D01G325000.1	Wheat	mitochondrion	18.97	18.74
TraesCS2D01G198500.1	Wheat	plastid	15.67	16.14
TraesCS5D01G372800.1	Wheat	plastid	19.38	16.07
TraesCS1D01G252000.1	Wheat	plastid	15.88	15.4
TraesCS2D01G255600.1	Wheat	mitochondrion	17.32	13.88

Protein Annotations

Gene3D:1.25.70.10	MapMan:15.6.2.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003690
GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0006950	GO:GO:0006970	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009628	GO:GO:0009651	GO:GO:0009658	GO:GO:0009719
GO:GO:0009737	GO:GO:0009987	GO:GO:0016043	InterPro:IPR038538	InterPro:MTERF	InterPro:MTERF_sf
PFAM:PF02536	PANTHER:PTHR13068	PANTHER:PTHR13068:SF9	SMART:SM00733	EnsemblPlantsGene:TraesCS6D01G196900	EnsemblPlants:TraesCS6D01G196900.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6D:+:273827344..273829520

Molecular Weight (calculated)

54775.6 Da

IEP (calculated)

9.422

GRAVY (calculated)

-0.173

Length

485 amino acids

Sequence
(BLAST)

001: MTSLQAAPRL SLHLTPSEHR GRLLPPWRLV LSPSSSCRLY TLISRQHPIC NAQSYADDLL VASAQSSTTA LSRLLAAERE EAKAVLSLFL RQKGLRSAVA
101: ARIANKSDGF IEHLSSKLQS AYRSRYAEGR ELSTPEIRDA LLPYLEALSK EHGDSLVEVV ENFPDPFSAE RESLSYSMIL TPTSSNKQKA IARVSTPTSG
201: GALPELVLYL LDYGMDHEEI KNVVRKFPAF AYYNVDRKIK PLVELLLELG VPRSGIPGII RKRPQLCGIS LTDNLKPMMA YMENIGVNKA QWSKVICRFP
301: AFLTYSRQKV EMTVSYLTEL GVSKENIGKI LTRCPHLMSY SVNDNLRPTA DYFRSIGADA ASLIQKCPQA FGLNIESKLK PITEFFLERE FSIEEIGIMV
401: NRFGIIHTLS LQENLIPKYE YFLTMGYPRY ELVKFPQYFG YSLEQRIKPR YARMTGCGVR LILNQMLSVS ETRFEEILQK KSGGF

Best Arabidopsis Sequence Match ( AT4G14605.2 )
(BLAST)

001: MQSLSQLGPS EIFLVARREK PSTRAQLWFT GRLSFRQETN GIRLKNRVEF SPRPVPPNLI AAEKEEAKAV LTLFFKKQGL SNSLSSRLIN KSDLFIDHLV
101: SRLHSVHKAR YLVGRELTTL EIRDSLIPYL EQLHEEHGDL LAELVVSFPD PPAEPRLVAS SPVSVLPPRG DTDSAADTRK LRAVSRVSEL DTEGALRPQT
201: LYLLDLGLNL EQIKTITRKF AAFPYYSLDG KIKPVVEFLL DLGIPKSDIP TILCKRPQIC GISLTDNLKP TMAFLETLGI DKNQWAKIIS RFPAILTYSR
301: QKLTSTVEFL SQTGLTEEQI GRILTRCPNI MSYSVEDKLR PTMEYFRSLN VDVAVLLHRC PQTFGLSIES NLKPVTEFFL EKGFGLDEIG IMISRYGALY
401: TFSLKENVMP KWDYFQTMDY PKSELVKFPQ FFGYSLQERI KPRYELVQRS GVRLLLNQVL SLSGIEFEKV VKKKMMKLVS NNVIAEQSSG GLL

Arabidopsis Description

MTERF5Transcription termination factor MTERF5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4JVI3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.