Factsheet for TraesCS1D01G252000.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G252300.1	Wheat	cytosol	78.8	99.49
TraesCS1B01G265700.1	Wheat	cytosol	86.0	99.31
HORVU1Hr1G061210.8	Barley	plastid	97.6	98.19
OQU77962	Sorghum	plastid	84.2	84.54
Os05t0404000-01	Rice	plastid	85.8	84.45
Zm00001d010340_P001	Maize	plastid	82.4	83.4
PGSC0003DMT400007420	Potato	mitochondrion	57.6	60.38
VIT_07s0104g00720.t01	Wine grape	mitochondrion	60.2	57.33
KRH72610	Soybean	plastid	57.4	55.41
GSMUA_Achr3P24870_001	Banana	cytosol, mitochondrion, plastid	42.8	54.87
Solyc04g005630.2.1	Tomato	nucleus	59.2	54.81
CDY22091	Canola	golgi, mitochondrion, plastid	55.8	52.54
Bra036228.1-P	Field mustard	golgi, mitochondrion, plastid	55.8	52.54
CDY21931	Canola	golgi, mitochondrion, plastid	55.2	52.17
AT4G02990.1	Thale cress	plastid	56.0	51.76
TraesCS6D01G325000.1	Wheat	mitochondrion	44.0	44.81
TraesCS7D01G248600.1	Wheat	cytosol	14.2	22.83
TraesCS4D01G156100.1	Wheat	mitochondrion	13.8	21.97
TraesCS5D01G432100.1	Wheat	plastid	14.2	21.71
TraesCS6D01G188800.1	Wheat	plastid	11.4	20.36
TraesCS2D01G198500.1	Wheat	plastid	16.6	17.62
TraesCS2D01G255600.1	Wheat	mitochondrion	20.0	16.53
TraesCS5D01G372800.1	Wheat	plastid	18.8	16.07
TraesCS6D01G196900.1	Wheat	plastid	15.4	15.88

Protein Annotations

Gene3D:1.25.70.10	MapMan:15.6.2.2	MapMan:16.12.2.1.1.6	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003690	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006139	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0008380	GO:GO:0009058	GO:GO:0009536	GO:GO:0009790	GO:GO:0009791	GO:GO:0009793
GO:GO:0009987	GO:GO:0032502	GO:GO:0042793	GO:GO:0042794	InterPro:IPR038538	InterPro:MTERF
InterPro:MTERF_sf	PFAM:PF02536	PANTHER:PTHR13068	PANTHER:PTHR13068:SF24	SMART:SM00733	EnsemblPlantsGene:TraesCS1D01G252000
EnsemblPlants:TraesCS1D01G252000.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1D:+:344590295..344592240

Molecular Weight (calculated)

56248.4 Da

IEP (calculated)

5.065

GRAVY (calculated)

-0.128

Length

500 amino acids

Sequence
(BLAST)

001: MMKSLFLFSA HPAPPLLPSP NLRRLLCLRA SSSSTSSRPR PGRRSPGPAR PRQPQPSSLY ARPSLLTMER DRAARRADVD AFLVSLGVDP GELAGLELPV
101: TVDVMRERVE FLRSLGLGPD DLAAYPLALG CSVRKNMVPV LDYLGKIGVR RDELPHLLRR YPQVLHASIV VDLAPVVKYL QGMDVKPGDV PRVLERYPEL
201: LGFKLEGTMS TSVAYLVGIG VARRQIGGVI TRFPEVLGMR VGKIIKPFVE HLQGIGLQRL AVARMIEKKP YVLGFGLEER VKPNIEALLE FGVRKEALAS
301: IVIQYPDVLG VELREKLVEQ QSLFESSILV SGDDFGRVIE RMPQAISLGR AAVLKHVNFL TGCGFLLSQV SKMVVGCPQL LALNMDIMKM NFEYFKNEME
401: RDLEELVEFP AFFTYGLEST IRYRHEIVAK KGFTCSLAWL LNCSDAKFDE RMKYDTIGVE EMEDDNSFDK DRFVEQVQDE DDEDMEEDSD YDDTDDEFIE

Best Arabidopsis Sequence Match ( AT4G02990.1 )
(BLAST)

001: MKIRFCNGFT KPGFLLVHFE PPSFFAVRSR SLSDSTYGNL CNHKKRPGTG IGLTVQCAIA NRRFSSRSLD SPRRERSSRS SSSSGRDRDR DKDKGRDSKS
101: LYSRPSLLDM NKEKAANRAK VYEFLRGIGI VPDELDGLEL PVTADVMKER VEFLHKLGLT IEDINNYPLV LGCSVKKNMV PVLDYLGKLG VRKSTFTEFL
201: RRYPQVLHSS VVIDLAPVVK YLQGLDIKPS DVPRVLERYP EVLGFKLEGT MSTSVAYLVG IGVARREIGG ILTRYPEILG MRVARIIKPL VEYLEVLGIP
301: RLAAARLIEK RPHILGFELD DTVKPNVQIL QDFNVRETSL PSIIAQYPEI IGIDLKPKLD TQRKLLCSAI HLNPEDLGSL IERMPQFVSL SESPMLKHID
401: FLTKCGFSID QTREMVIGCP QVLALNLGIM KLSFEYFQKE MKRPLQDLVD FPAFFTYGLE STVKPRHKKI IKKGIKCSLA WMLNCSDEKF EQRMSYDTID
501: IEEVETDPSS FDMNTLMQPE REEESDSEYE EEEDDDDEEF A

Arabidopsis Description

MTERF4Transcription termination factor MTERF4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9ZT96]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.