Factsheet for PGSC0003DMT400007420

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
cytosol 2
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g005630.2.1	Tomato	nucleus	97.9	86.48
VIT_07s0104g00720.t01	Wine grape	mitochondrion	74.84	68.0
KRH72610	Soybean	plastid	71.07	65.44
TraesCS1A01G252300.1	Wheat	cytosol	54.09	65.15
TraesCS1B01G265700.1	Wheat	cytosol	58.49	64.43
Bra036228.1-P	Field mustard	golgi, mitochondrion, plastid	70.44	63.28
CDY22091	Canola	golgi, mitochondrion, plastid	70.44	63.28
AT4G02990.1	Thale cress	plastid	71.28	62.85
CDY21931	Canola	golgi, mitochondrion, plastid	69.6	62.76
TraesCS2A01G284000.1	Wheat	cytosol	17.19	60.74
OQU77962	Sorghum	plastid	61.01	58.43
HORVU1Hr1G061210.8	Barley	plastid	60.38	57.95
Zm00001d010340_P001	Maize	plastid	59.96	57.89
TraesCS1D01G252000.1	Wheat	plastid	60.38	57.6
Os05t0404000-01	Rice	plastid	60.59	56.89
GSMUA_Achr3P24870_001	Banana	cytosol, mitochondrion, plastid	45.7	55.9
PGSC0003DMT400023814	Potato	mitochondrion	48.64	47.15
PGSC0003DMT400047490	Potato	mitochondrion	6.29	31.91
PGSC0003DMT400075363	Potato	cytosol	9.64	22.12
PGSC0003DMT400059549	Potato	cytosol	14.68	21.34
PGSC0003DMT400085903	Potato	plastid	14.26	21.25
PGSC0003DMT400047424	Potato	plastid	13.63	20.44
PGSC0003DMT400076662	Potato	cytosol	12.37	20.21
PGSC0003DMT400001905	Potato	plastid	11.32	19.22
PGSC0003DMT400080487	Potato	plastid	12.37	19.03
PGSC0003DMT400052092	Potato	mitochondrion	15.93	15.7
PGSC0003DMT400001588	Potato	plastid	16.14	14.86
PGSC0003DMT400001916	Potato	plastid	20.13	13.93
PGSC0003DMT400023772	Potato	plastid	16.56	13.23

Protein Annotations

Gene3D:1.25.70.10	MapMan:15.6.2.2	MapMan:16.12.2.1.1.6	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003690	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006139	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0008380	GO:GO:0009058	GO:GO:0009536	GO:GO:0009790	GO:GO:0009791	GO:GO:0009793
GO:GO:0009987	GO:GO:0032502	GO:GO:0042793	GO:GO:0042794	InterPro:IPR038538	UniProt:M0ZSY7
InterPro:MTERF	InterPro:MTERF_sf	PFAM:PF02536	EnsemblPlantsGene:PGSC0003DMG400002856	PGSC:PGSC0003DMG400002856	EnsemblPlants:PGSC0003DMT400007420
PANTHER:PTHR13068	PANTHER:PTHR13068:SF24	SMART:SM00733	UniParc:UPI000294CB51	SEG:seg	:

Description

Mitochondrial transcription termination factor family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400002856]

Coordinates

chr4:-:256005..261562

Molecular Weight (calculated)

54082.1 Da

IEP (calculated)

6.338

GRAVY (calculated)

-0.139

Length

477 amino acids

Sequence
(BLAST)

001: MKKKDLMMRL PCCFTTRAAL SSSVKTDTYS GSKKQKSSSF YTHPSLLEMK NEKAANRVRV YEFLRGIGIV PDELDGLELP VTVEVMRERV DFLHKLGLTI
101: EDINNYPLVL GCSVKKNMIP VLDYLGKLGV RKSTLTDFLR RYPQVLHASV VVDLAPVVKY LQGMDIKPND IPRVLEKYPE VLGFKLEGTM STSVAYLVGI
201: GVARREIGGL LTRYPEILGM RVGRVIKPFV EYLEVLGIPR LAVARLIEKH PHILGFGLQE RVKPNIQSLL QFHVRETTLP SVIAQYPEIL GIDMEAKLPS
301: QQEFLNSIIE STREDFGRVI EKMPQIISLS KAPVVKHVDF LKGCGFSSEQ VREMVVGCPQ VLALNLDIMK QSFEYFKTTM ARPLEDLVAF PAFFTYGLES
401: TIKPRHKKIA EKGLKCSLAW LLNCSDEKFD QRMSYDIIDM EEMEVGESSF DMNTLLEPRN DESASDYDDD YSEDDNV

Best Arabidopsis Sequence Match ( AT4G02990.1 )
(BLAST)

001: MKIRFCNGFT KPGFLLVHFE PPSFFAVRSR SLSDSTYGNL CNHKKRPGTG IGLTVQCAIA NRRFSSRSLD SPRRERSSRS SSSSGRDRDR DKDKGRDSKS
101: LYSRPSLLDM NKEKAANRAK VYEFLRGIGI VPDELDGLEL PVTADVMKER VEFLHKLGLT IEDINNYPLV LGCSVKKNMV PVLDYLGKLG VRKSTFTEFL
201: RRYPQVLHSS VVIDLAPVVK YLQGLDIKPS DVPRVLERYP EVLGFKLEGT MSTSVAYLVG IGVARREIGG ILTRYPEILG MRVARIIKPL VEYLEVLGIP
301: RLAAARLIEK RPHILGFELD DTVKPNVQIL QDFNVRETSL PSIIAQYPEI IGIDLKPKLD TQRKLLCSAI HLNPEDLGSL IERMPQFVSL SESPMLKHID
401: FLTKCGFSID QTREMVIGCP QVLALNLGIM KLSFEYFQKE MKRPLQDLVD FPAFFTYGLE STVKPRHKKI IKKGIKCSLA WMLNCSDEKF EQRMSYDTID
501: IEEVETDPSS FDMNTLMQPE REEESDSEYE EEEDDDDEEF A

Arabidopsis Description

MTERF4Transcription termination factor MTERF4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9ZT96]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.