Factsheet for VIT_07s0104g00720.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
cytosol 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400007420	Potato	mitochondrion	68.0	74.84
KRH72610	Soybean	plastid	72.19	73.17
Solyc04g005630.2.1	Tomato	nucleus	71.43	69.44
AT4G02990.1	Thale cress	plastid	69.33	67.28
TraesCS1A01G252300.1	Wheat	cytosol	49.52	65.66
Bra036228.1-P	Field mustard	golgi, mitochondrion, plastid	65.71	64.97
CDY22091	Canola	golgi, mitochondrion, plastid	65.71	64.97
CDY21931	Canola	golgi, mitochondrion, plastid	64.95	64.46
TraesCS1B01G265700.1	Wheat	cytosol	52.95	64.2
GSMUA_Achr3P24870_001	Banana	cytosol, mitochondrion, plastid	45.33	61.03
Os05t0404000-01	Rice	plastid	58.29	60.24
TraesCS1D01G252000.1	Wheat	plastid	57.33	60.2
HORVU1Hr1G061210.8	Barley	plastid	56.95	60.16
TraesCS2A01G284000.1	Wheat	cytosol	15.43	60.0
OQU77962	Sorghum	plastid	56.38	59.44
Zm00001d010340_P001	Maize	plastid	54.86	58.3
VIT_11s0016g02240.t01	Wine grape	mitochondrion	45.71	49.9
VIT_03s0038g04180.t01	Wine grape	cytosol, plastid	14.86	22.03
VIT_03s0063g02460.t01	Wine grape	plastid	11.43	21.74
VIT_01s0010g03740.t01	Wine grape	plastid	12.19	20.45
VIT_08s0007g02500.t01	Wine grape	plastid	12.57	19.53
VIT_10s0003g04040.t01	Wine grape	plastid	12.95	19.32
VIT_03s0063g02590.t01	Wine grape	cytosol	18.29	16.87
VIT_14s0171g00230.t01	Wine grape	plastid	15.24	16.16
VIT_19s0090g01770.t01	Wine grape	plastid	15.43	16.1
VIT_09s0054g01030.t01	Wine grape	plastid	17.9	15.64
VIT_16s0098g00970.t01	Wine grape	plastid	16.19	4.21

Protein Annotations

Gene3D:1.25.70.10	EntrezGene:100249461	wikigene:100249461	MapMan:15.6.2.2	MapMan:16.12.2.1.1.6	EMBL:AM470340
ProteinID:CAN74988	ProteinID:CAN74988.1	ProteinID:CCB56803	ProteinID:CCB56803.1	UniProt:F6HQ47	EMBL:FN596005
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003690	GO:GO:0003723	GO:GO:0003727
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0008380	GO:GO:0009058	GO:GO:0009507
GO:GO:0009536	GO:GO:0009658	GO:GO:0009987	GO:GO:0016043	GO:GO:0019843	GO:GO:0032502
GO:GO:0042255	InterPro:IPR038538	EntrezGene:LOC100249461	wikigene:LOC100249461	InterPro:MTERF	InterPro:MTERF_sf
PFAM:PF02536	PANTHER:PTHR13068	PANTHER:PTHR13068:SF24	SMART:SM00733	UniParc:UPI0002108E4D	ArrayExpress:VIT_07s0104g00720
EnsemblPlantsGene:VIT_07s0104g00720	EnsemblPlants:VIT_07s0104g00720.t01	unigene:Vvi.8305	RefSeq:XP_002273388	RefSeq:XP_002273388.1	SEG:seg

Description

No Description!

Coordinates

chr7:+:1887719..1890896

Molecular Weight (calculated)

59346.5 Da

IEP (calculated)

6.529

GRAVY (calculated)

-0.125

Length

525 amino acids

Sequence
(BLAST)

001: MNMKIRSYGC ITKPSLLLVH PELPCRPQLI FASSLGFSSN REKRIGHATR LQYSVADKTF VSSSTNSPLS KVNATHLEQR QGGSSSLYSR PSLLQMKNQR
101: IENRARVYEF LKGIGIVPDE LDGLELPVTV EVMKERVDFL HKLGLSIEDI NNYPLVLGCS VKKNMIPVLD YLGKLGVRKS TFTEFLRRYP QVLHASVVVD
201: LAPVVKNLQG MDIKPNDIPR VLEKYPEVLG FKLEGTMSTS VAYLVGIGVA RREIGGVLTR YPEILGMRVG RVIKPFVEYL ESLGIPRLAV ARLIEKRPHI
301: LGFGLEERVK ANVKSLLEFD VRKTSLASMI AQYPEIIGID LEPKLLSQRS LLNSALDLGP EDFPIVVEKM PQVVSLGKTP MLKHVDFLKD CGFSLQQVRK
401: MVVGCPQLLA LNLDIMKFSF DFFQKEMERP LDDLVAFPAF FTYGLESTIR PRHQMVAKKG LKCSLSWLLI CSDEKFEERM NYDSIELEEM EMVSSFDMNT
501: LMEPRSDESD ESASDYEEDS DDEYA

Best Arabidopsis Sequence Match ( AT4G02990.1 )
(BLAST)

001: MKIRFCNGFT KPGFLLVHFE PPSFFAVRSR SLSDSTYGNL CNHKKRPGTG IGLTVQCAIA NRRFSSRSLD SPRRERSSRS SSSSGRDRDR DKDKGRDSKS
101: LYSRPSLLDM NKEKAANRAK VYEFLRGIGI VPDELDGLEL PVTADVMKER VEFLHKLGLT IEDINNYPLV LGCSVKKNMV PVLDYLGKLG VRKSTFTEFL
201: RRYPQVLHSS VVIDLAPVVK YLQGLDIKPS DVPRVLERYP EVLGFKLEGT MSTSVAYLVG IGVARREIGG ILTRYPEILG MRVARIIKPL VEYLEVLGIP
301: RLAAARLIEK RPHILGFELD DTVKPNVQIL QDFNVRETSL PSIIAQYPEI IGIDLKPKLD TQRKLLCSAI HLNPEDLGSL IERMPQFVSL SESPMLKHID
401: FLTKCGFSID QTREMVIGCP QVLALNLGIM KLSFEYFQKE MKRPLQDLVD FPAFFTYGLE STVKPRHKKI IKKGIKCSLA WMLNCSDEKF EQRMSYDTID
501: IEEVETDPSS FDMNTLMQPE REEESDSEYE EEEDDDDEEF A

Arabidopsis Description

MTERF4Transcription termination factor MTERF4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9ZT96]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.